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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.462466 (75 seq.)
>CHL1830000033
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
68423
68495
+
Glu
TTC
[ENA]
¡û
>CHL1830000492
KC900889
Haptophyceae
Phaeocystis globosa (KC900889)
66298
66225
-
Glu
TTC
[ENA]
¡û
>CHL1830000566
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
171104
171176
+
Glu
TTC
[ENA]
¡û
>CHL1830000610
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
169510
169582
+
Glu
TTC
[ENA]
¡û
>CHL1830000645
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
32621
32693
+
Glu
TTC
[ENA]
¡û
>CHL1830001201
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
8757
8685
-
Glu
TTC
[ENA]
¡û
>CHL1830001690
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
209318
209246
-
Glu
TTC
[ENA]
¡û
>CHL1830002144
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
34918
34846
-
Glu
TTC
[ENA]
¡û
>CHL1830002152
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
37429
37357
-
Glu
TTC
[ENA]
¡û
>CHL1830002158
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
32032
31960
-
Glu
TTC
[ENA]
¡û
>CHL1830002161
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
34446
34374
-
Glu
TTC
[ENA]
¡û
>CHL1830002165
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
31929
31857
-
Glu
TTC
[ENA]
¡û
>CHL1830002168
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
34713
34640
-
Glu
TTC
[ENA]
¡û
>CHL1830002179
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
33908
33835
-
Glu
TTC
[ENA]
¡û
>CHL1830002183
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
33978
33906
-
Glu
TTC
[ENA]
¡û
>CHL1830002187
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
34184
34112
-
Glu
TTC
[ENA]
¡û
>CHL1830002191
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
34800
34727
-
Glu
TTC
[ENA]
¡û
>CHL1830002193
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
33823
33750
-
Glu
TTC
[ENA]
¡û
>CHL1830002211
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
37494
37422
-
Glu
TTC
[ENA]
¡û
>CHL1830002213
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
36841
36769
-
Glu
TTC
[ENA]
¡û
>CHL1830002227
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
34786
34713
-
Glu
TTC
[ENA]
¡û
>CHL1830002240
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
34287
34215
-
Glu
TTC
[ENA]
¡û
>CHL1830002242
MF101465
Rhodophyta
Digenea simplex (MF101465)
34792
34720
-
Glu
TTC
[ENA]
¡û
>CHL1830002244
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
33867
33795
-
Glu
TTC
[ENA]
¡û
>CHL1830002545
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
29092
29164
+
Glu
TTC
[ENA]
¡û
>CHL1830002680
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
37932
37860
-
Glu
TTC
[ENA]
¡û
>CHL1830000368
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
170671
170745
+
Glu
TTC
[ENA]
¡û
>CHL1830000422
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
179406
179480
+
Glu
TTC
[ENA]
¡û
>CHL1830001337
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
174696
174622
-
Glu
TTC
[ENA]
¡û
>CHL1830001662
KY018922
Rhodophyta
Gracilaria changii (KY018922)
11171
11097
-
Glu
TTC
[ENA]
¡û
>CHL1830001665
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
178176
178250
+
Glu
TTC
[ENA]
¡û
>CHL1830001952
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
193458
193384
-
Glu
TTC
[ENA]
¡û
>CHL1830001953
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
603558
603483
-
Glu
TTC
[ENA]
¡û
>CHL1830002147
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
34907
34833
-
Glu
TTC
[ENA]
¡û
>CHL1830002149
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
34698
34624
-
Glu
TTC
[ENA]
¡û
>CHL1830002155
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
36036
35962
-
Glu
TTC
[ENA]
¡û
>CHL1830002170
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
34355
34281
-
Glu
TTC
[ENA]
¡û
>CHL1830002181
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
34972
34898
-
Glu
TTC
[ENA]
¡û
>CHL1830002185
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
34085
34010
-
Glu
TTC
[ENA]
¡û
>CHL1830002189
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
34794
34720
-
Glu
TTC
[ENA]
¡û
>CHL1830002195
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
34101
34027
-
Glu
TTC
[ENA]
¡û
>CHL1830002198
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
34170
34096
-
Glu
TTC
[ENA]
¡û
>CHL1830002201
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
34177
34103
-
Glu
TTC
[ENA]
¡û
>CHL1830002203
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
33978
33903
-
Glu
TTC
[ENA]
¡û
>CHL1830002205
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
34471
34397
-
Glu
TTC
[ENA]
¡û
>CHL1830002207
MF101439
Rhodophyta
Vertebrata australis (MF101439)
34140
34066
-
Glu
TTC
[ENA]
¡û
>CHL1830002209
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
34339
34265
-
Glu
TTC
[ENA]
¡û
>CHL1830002216
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
35369
35295
-
Glu
TTC
[ENA]
¡û
>CHL1830002218
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
34292
34218
-
Glu
TTC
[ENA]
¡û
>CHL1830002221
MF101445
Rhodophyta
Sonderella linearis (MF101445)
34549
34475
-
Glu
TTC
[ENA]
¡û
>CHL1830002224
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
34446
34372
-
Glu
TTC
[ENA]
¡û
>CHL1830002229
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
34703
34629
-
Glu
TTC
[ENA]
¡û
>CHL1830002232
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
36550
36475
-
Glu
TTC
[ENA]
¡û
>CHL1830002234
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
38000
37926
-
Glu
TTC
[ENA]
¡û
>CHL1830002236
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
31924
31850
-
Glu
TTC
[ENA]
¡û
>CHL1830002238
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
33011
32937
-
Glu
TTC
[ENA]
¡û
>CHL090200002
AB002583
Rhodophyta
Cyanidioschyzon merolae
122840
122768
-
Glu
TTC
[ENA]
¡û
>CHL090200012
AF041468
Cryptophyta
Guillardia theta
54724
54796
+
Glu
TTC
[ENA]
¡û
>CHL090200015
AF137379
Viridiplantae
Nephroselmis olivacea
64267
64195
-
Glu
TTC
[ENA]
¡û
>CHL090200042
AP006715
Rhodophyta
Porphyra yezoensis
177269
177342
+
Glu
TTC
[ENA]
¡û
>CHL090200067
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
92490
92562
+
Glu
TTC
[ENA]
¡û
>CHL090200074
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
175186
175258
+
Glu
TTC
[ENA]
¡û
>CHL090200075
AY741371
Haptophyceae
Emiliania huxleyi
76855
76927
+
Glu
TTC
[ENA]
¡û
>CHL090200139
EF508371
Cryptophyta
Rhodomonas salina
60443
60515
+
Glu
TTC
[ENA]
¡û
>CHL090200152
U38804
Rhodophyta
Porphyra purpurea
176359
176433
+
Glu
TTC
[ENA]
¡û
>W11300267
ACYA01000025
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [ACYA]
91425
91497
+
Glu
TTC
[ENA]
¡û
>W11300269
ACYB01000046
Cyanobacteriota
Raphidiopsis brookii D9 [ACYB]
88921
88848
-
Glu
TTC
[ENA]
¡û
>W1630013603
LMVE01000042
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
119618
119546
-
Glu
TTC
[ENA]
¡û
>W1630017926
LUBZ01000001
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
129571
129644
+
Glu
TTC
[ENA]
¡û
>W1630020369
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2294121
2294049
-
Glu
TTC
[ENA]
¡û
>W1730016036
LMVE01000042
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
119618
119546
-
Glu
TTC
[ENA]
¡û
>W1730021237
LUBZ01000001
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
129571
129644
+
Glu
TTC
[ENA]
¡û
>W1730024133
LYXA01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CS-505 [LYXA]
2294121
2294049
-
Glu
TTC
[ENA]
¡û
>W1730025930
MBQX01000140
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
98381
98453
+
Glu
TTC
[ENA]
¡û
>W1730025931
MBQY01000001
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
136571
136498
-
Glu
TTC
[ENA]
¡û
Identical group No.504603 (3 seq.)
>CHL1830001356
KX013545
Viridiplantae
Cymbomonas tetramitiformis PLY262 (KX013545)
35894
35966
+
Glu
TTC
[ENA]
¡û
>CHL1830002176
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
32573
32499
-
Glu
TTC
[ENA]
¡û
>CHL1830002517
MG520331
Haptophyceae
Chrysochromulina parva (MG520331)
50445
50371
-
Glu
TTC
[ENA]
¡û
Identical group No.586946 (1 seq.)
>CHL090200010
AF022186
Rhodophyta
Cyanidium caldarium
118942
118868
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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