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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TTG
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.581962 (1 seq.)
>CHL1810027988
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
38527
38599
+
Gln
TTG
[ENA]
¡û
Identical group No.670033 (2 seq.)
>CHL1810011899
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
39601
39674
+
Gln
TTG
[ENA]
¡û
>CHL1810049762
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
161065
160992
-
Gln
TTG
[ENA]
¡û
Identical group No.670127 (23 seq.)
>CHL1810049890
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
172651
172578
-
Gln
TTG
[ENA]
¡û
>CHL1810049985
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
162539
162466
-
Gln
TTG
[ENA]
¡û
>CHL1810050011
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
162775
162702
-
Gln
TTG
[ENA]
¡û
>CHL1810050036
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
158262
158189
-
Gln
TTG
[ENA]
¡û
>CHL1810050085
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
156793
156720
-
Gln
TTG
[ENA]
¡û
>CHL1810050110
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
166348
166275
-
Gln
TTG
[ENA]
¡û
>CHL1810050136
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
160556
160483
-
Gln
TTG
[ENA]
¡û
>CHL1810050161
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
159769
159696
-
Gln
TTG
[ENA]
¡û
>CHL1810050186
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
159059
158986
-
Gln
TTG
[ENA]
¡û
>CHL1810050211
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
159839
159766
-
Gln
TTG
[ENA]
¡û
>CHL1810050263
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
156219
156146
-
Gln
TTG
[ENA]
¡û
>CHL1810050288
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
158250
158177
-
Gln
TTG
[ENA]
¡û
>CHL1810050361
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
155772
155699
-
Gln
TTG
[ENA]
¡û
>CHL1810050386
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
158791
158718
-
Gln
TTG
[ENA]
¡û
>CHL1810050412
MF101439
Rhodophyta
Vertebrata australis (MF101439)
158241
158168
-
Gln
TTG
[ENA]
¡û
>CHL1810050539
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
159470
159397
-
Gln
TTG
[ENA]
¡û
>CHL1810050613
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
160375
160302
-
Gln
TTG
[ENA]
¡û
>CHL1810050639
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
166078
166005
-
Gln
TTG
[ENA]
¡û
>CHL1810050690
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
165425
165352
-
Gln
TTG
[ENA]
¡û
>CHL1810050740
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
153967
153894
-
Gln
TTG
[ENA]
¡û
>CHL1810050765
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
159596
159523
-
Gln
TTG
[ENA]
¡û
>CHL1810050791
MF101465
Rhodophyta
Digenea simplex (MF101465)
165640
165567
-
Gln
TTG
[ENA]
¡û
>CHL1810050817
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
156599
156526
-
Gln
TTG
[ENA]
¡û
Identical group No.670131 (2 seq.)
>CHL1810049914
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
155916
155843
-
Gln
TTG
[ENA]
¡û
>CHL1810050061
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
155987
155914
-
Gln
TTG
[ENA]
¡û
Identical group No.676071 (3 seq.)
>WENV181406162
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
89436
89365
-
Gln
TTG
[ENA]
¢þ
>CHL090100039
AB002583
Rhodophyta
Cyanidioschyzon merolae
57613
57684
+
Gln
TTG
[ENA]
¡û
>CHL090101453
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
8044
7973
-
Gln
TTG
[ENA]
¡û
Identical group No.682190 (3 seq.)
>WENV170022138
BCQK01000659
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2728
2655
-
Gln
TTG
[ENA]
¢þ
>WENV170024896
BCQL01153824
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
280
353
+
Gln
TTG
[ENA]
¢þ
>CHL1810006809
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
38063
38136
+
Gln
TTG
[ENA]
¡û
Identical group No.684388 (3 seq.)
>WENV181233270
OFES01000086
[OFES] coral metagenome; NA
8682
8754
+
Gln
TTG
[ENA]
¢þ
>WENV181235068
OFEW01050876
[OFEW] coral metagenome; NA
172
100
-
Gln
TTG
[ENA]
¢þ
>CHL1810045142
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
63090
63161
+
Gln
TTG
[ENA]
¡û
Identical group No.684402 (6 seq.)
>CHL1810049812
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
162484
162413
-
Gln
TTG
[ENA]
¡û
>CHL1810049863
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
159118
159045
-
Gln
TTG
[ENA]
¡û
>CHL1810050237
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
166159
166086
-
Gln
TTG
[ENA]
¡û
>CHL1810050437
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
159237
159164
-
Gln
TTG
[ENA]
¡û
>CHL1810050514
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
161027
160954
-
Gln
TTG
[ENA]
¡û
>CHL1810050588
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
158833
158762
-
Gln
TTG
[ENA]
¡û
Identical group No.687795 (7 seq.)
>CHL1810008221
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
140729
140656
-
Gln
TTG
[ENA]
¡û
>CHL1810010844
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
40594
40665
+
Gln
TTG
[ENA]
¡û
>CHL1810049838
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
166808
166735
-
Gln
TTG
[ENA]
¡û
>CHL1810049938
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
161505
161432
-
Gln
TTG
[ENA]
¡û
>CHL1810050463
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
166042
165971
-
Gln
TTG
[ENA]
¡û
>CHL090100879
AP006715
Rhodophyta
Porphyra yezoensis
138887
138814
-
Gln
TTG
[ENA]
¡û
>CHL090103172
U38804
Rhodophyta
Porphyra purpurea
137425
137352
-
Gln
TTG
[ENA]
¡û
Identical group No.696005 (1 seq.)
>CHL1810050312
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
157442
157369
-
Gln
TTG
[ENA]
¡û
Identical group No.703882 (6 seq.)
>CHL1810024540
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
140869
140798
-
Gln
TTG
[ENA]
¡û
>CHL1810050563
MF101445
Rhodophyta
Sonderella linearis (MF101445)
160586
160515
-
Gln
TTG
[ENA]
¡û
>CHL1810050715
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
154598
154527
-
Gln
TTG
[ENA]
¡û
>CHL1810058636
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
79520
79593
+
Gln
TTG
[ENA]
¡û
>CHL1810060916
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
168800
168729
-
Gln
TTG
[ENA]
¡û
>CHL090101571
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
44358
44429
+
Gln
TTG
[ENA]
¡û
Identical group No.711730 (1 seq.)
>CHL1810045171
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
537501
537572
+
Gln
TTG
[ENA]
¡û
Identical group No.719405 (2 seq.)
>WENV170023585
BCQL01000099
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6761
6834
+
Gln
TTG
[ENA]
¢þ
>CHL1810050488
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
165084
165011
-
Gln
TTG
[ENA]
¡û
Identical group No.726056 (1 seq.)
>CHL1810049961
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
156832
156759
-
Gln
TTG
[ENA]
¡û
Identical group No.735156 (1 seq.)
>CHL090100261
AF022186
Rhodophyta
Cyanidium caldarium
97319
97248
-
Gln
TTG
[ENA]
¡û
Identical group No.738480 (1 seq.)
>CHL1810038737
KY018922
Rhodophyta
Gracilaria changii (KY018922)
145732
145660
-
Gln
TTG
[ENA]
¡û
Identical group No.738482 (1 seq.)
>CHL1810038781
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
43640
43713
+
Gln
TTG
[ENA]
¡û
Identical group No.750909 (1 seq.)
>CHL1810050336
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
161533
161460
-
Gln
TTG
[ENA]
¡û
Identical group No.755976 (1 seq.)
>CHL1810050665
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
168489
168416
-
Gln
TTG
[ENA]
¡û
Identical group No.760738 (1 seq.)
>CHL1810000556
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
172182
172109
-
Gln
TTG
[ENA]
¡û
Identical group No.770462 (1 seq.)
>CHL1810049787
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
162056
161983
-
Gln
TTG
[ENA]
¡û
Identical group No.823710 (1 seq.)
>CHL1810039434
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
85102
85174
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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