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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Sediment metagenome
Anticodon = CAA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173214 (1 seq.)
>WENV11100223
ADZX01000599
Sediment metagenome
2776
2861
+
Leu
CAA
[ENA]
¡û
Identical group No.201952 (2 seq.)
>WENV181144916
OEHO01132793
[OEHO] metagenome; unknown
214
130
-
Leu
CAA
[ENA]
¢þ
>WENV11100245
ADZX01000893
Sediment metagenome
40
124
+
Leu
CAA
[ENA]
¡û
Identical group No.208690 (1 seq.)
>WENV11100201
ADZX01000253
Sediment metagenome
956
1040
+
Leu
CAA
[ENA]
¡û
Identical group No.208692 (1 seq.)
>WENV11100205
ADZX01000305
Sediment metagenome
129
210
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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