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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Sediment metagenome
Anticodon = CGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465552 (65 seq.)
>W1710893426
LNET01000055
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
94306
94381
+
Ala
CGC
[ENA]
¡û
>W1711387283
MEGM01000137
Betaproteobacteria
Rubrivivax sp. SCN 70-15 [MEGM]
8665
8740
+
Ala
CGC
[ENA]
¡û
>W1711793380
MWLO01000153
Betaproteobacteria
Ideonella sp. A 288 A 288 [MWLO]
49173
49248
+
Ala
CGC
[ENA]
¡û
>W131214611
ATUI01000007
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI]
52955
53030
+
Ala
CGC
[ENA]
¡û
>WENV180016502
FSVG01001143
[FSVG] metagenome; soil
5422
5497
+
Ala
CGC
[ENA]
¢þ
>WENV180016866
FSVX01001292
[FSVX] metagenome; soil
2315
2390
+
Ala
CGC
[ENA]
¢þ
>WENV180016925
FSWB01000370
[FSWB] metagenome; soil
4826
4751
-
Ala
CGC
[ENA]
¢þ
>WENV180016931
FSWB01000541
[FSWB] metagenome; soil
10076
10151
+
Ala
CGC
[ENA]
¢þ
>WENV180017765
FSXQ01001647
[FSXQ] metagenome; soil
16599
16672
+
Ala
CGC
[ENA]
¢þ
>WENV180017770
FSXQ01001893
[FSXQ] metagenome; soil
1343
1268
-
Ala
CGC
[ENA]
¢þ
>WENV180019434
FTBV01002261
[FTBV] metagenome; soil
11705
11780
+
Ala
CGC
[ENA]
¢þ
>WENV180019703
FTCI01000041
[FTCI] metagenome; soil
2739
2814
+
Ala
CGC
[ENA]
¢þ
>WENV180019705
FTCI01000091
[FTCI] metagenome; soil
289
364
+
Ala
CGC
[ENA]
¢þ
>WENV180019711
FTCK01000043
[FTCK] metagenome; soil
3088
3013
-
Ala
CGC
[ENA]
¢þ
>WENV180019715
FTCK01000099
[FTCK] metagenome; soil
2414
2339
-
Ala
CGC
[ENA]
¢þ
>WENV180020567
FTCZ01006213
[FTCZ] metagenome; soil
4511
4586
+
Ala
CGC
[ENA]
¢þ
>WENV180020921
FTDG01002423
[FTDG] metagenome; soil
16288
16213
-
Ala
CGC
[ENA]
¢þ
>WENV180020936
FTDG01003087
[FTDG] metagenome; soil
560
635
+
Ala
CGC
[ENA]
¢þ
>WENV180020975
FTDG01004203
[FTDG] metagenome; soil
9281
9206
-
Ala
CGC
[ENA]
¢þ
>WENV180023802
FTIF01000584
[FTIF] metagenome; soil
13241
13166
-
Ala
CGC
[ENA]
¢þ
>WENV180023803
FTIF01000584
[FTIF] metagenome; soil
12747
12672
-
Ala
CGC
[ENA]
¢þ
>WENV180023878
FTIF01002948
[FTIF] metagenome; soil
17685
17760
+
Ala
CGC
[ENA]
¢þ
>WENV180023981
FTIF01005432
[FTIF] metagenome; soil
1423
1348
-
Ala
CGC
[ENA]
¢þ
>WENV180024079
FTIF01028275
[FTIF] metagenome; soil
284
359
+
Ala
CGC
[ENA]
¢þ
>WENV180025228
FTIN01005292
[FTIN] metagenome; soil
22
97
+
Ala
CGC
[ENA]
¢þ
>WENV180025424
FTIP01003439
[FTIP] metagenome; soil
4466
4391
-
Ala
CGC
[ENA]
¢þ
>WENV180025430
FTIP01003958
[FTIP] metagenome; soil
119
194
+
Ala
CGC
[ENA]
¢þ
>WENV180025439
FTIP01004486
[FTIP] metagenome; soil
432
507
+
Ala
CGC
[ENA]
¢þ
>WENV180025479
FTIP01013389
[FTIP] metagenome; soil
192
267
+
Ala
CGC
[ENA]
¢þ
>WENV180025497
FTIP01023036
[FTIP] metagenome; soil
481
556
+
Ala
CGC
[ENA]
¢þ
>WENV180025501
FTIP01024112
[FTIP] metagenome; soil
1456
1531
+
Ala
CGC
[ENA]
¢þ
>WENV180025502
FTIP01024229
[FTIP] metagenome; soil
712
637
-
Ala
CGC
[ENA]
¢þ
>WENV180025534
FTIP01043675
[FTIP] metagenome; soil
218
293
+
Ala
CGC
[ENA]
¢þ
>WENV180025666
FTIP01283316
[FTIP] metagenome; soil
276
201
-
Ala
CGC
[ENA]
¢þ
>WENV180025721
FTIQ01001382
[FTIQ] metagenome; soil
1454
1529
+
Ala
CGC
[ENA]
¢þ
>WENV180026224
FTIR01447413
[FTIR] metagenome; soil
6804
6729
-
Ala
CGC
[ENA]
¢þ
>WENV180026233
FTIR01452730
[FTIR] metagenome; soil
88612
88537
-
Ala
CGC
[ENA]
¢þ
>WENV180028086
FTIZ01714492
[FTIZ] metagenome; soil
2
77
+
Ala
CGC
[ENA]
¢þ
>WENV180030552
FTJN01000071
[FTJN] metagenome; soil
44364
44439
+
Ala
CGC
[ENA]
¢þ
>WENV180032742
FTKD01000300
[FTKD] metagenome; soil
11154
11079
-
Ala
CGC
[ENA]
¢þ
>WENV180034066
FTKM01413662
[FTKM] metagenome; soil
345
270
-
Ala
CGC
[ENA]
¢þ
>WENV180035008
FTKT01000091
[FTKT] metagenome; soil
55677
55602
-
Ala
CGC
[ENA]
¢þ
>WENV180035138
FTKT01002739
[FTKT] metagenome; soil
123
48
-
Ala
CGC
[ENA]
¢þ
>WENV180035173
FTKT01003379
[FTKT] metagenome; soil
2864
2789
-
Ala
CGC
[ENA]
¢þ
>WENV180035336
FTKT01256150
[FTKT] metagenome; soil
435
360
-
Ala
CGC
[ENA]
¢þ
>WENV180035412
FTKW01000017
[FTKW] metagenome; soil
18085
18010
-
Ala
CGC
[ENA]
¢þ
>WENV181188369
OEOE01099846
[OEOE] activated sludge metagenome; Activated Sludge
270
345
+
Ala
CGC
[ENA]
¢þ
>WENV181227148
OFDN01002375
[OFDN] hot springs metagenome; Water
3218
3293
+
Ala
CGC
[ENA]
¢þ
>WENV183697228
OUNJ010097972
[OUNJ] metagenome; soil
979
904
-
Ala
CGC
[ENA]
¢þ
>WENV183697239
OUNJ010124119
[OUNJ] metagenome; soil
99
174
+
Ala
CGC
[ENA]
¢þ
>WENV183697335
OUNJ010433176
[OUNJ] metagenome; soil
8
83
+
Ala
CGC
[ENA]
¢þ
>WENV170552390
CXWJ01061585
[CXWJ] wastewater metagenome; activated sludge
1345
1420
+
Ala
CGC
[ENA]
¢þ
>WENV170553901
CXWK01037019
[CXWK] wastewater metagenome; activated sludge
228
153
-
Ala
CGC
[ENA]
¢þ
>WENV170639873
JFJP01010792
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2225
2150
-
Ala
CGC
[ENA]
¢þ
>WENV170708980
LNFM01000056
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
87483
87408
-
Ala
CGC
[ENA]
¢þ
>WENV170711649
LNFM01006311
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
13706
13781
+
Ala
CGC
[ENA]
¢þ
>WENV170713176
LNFM01025562
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5190
5265
+
Ala
CGC
[ENA]
¢þ
>ENV09001153
ABSQ01039615
Freshwater sediment metagenome lwMethenol_C1
830
755
-
Ala
CGC
[ENA]
¡û
>WENV11100224
ADZX01000600
Sediment metagenome
6932
6857
-
Ala
CGC
[ENA]
¡û
>W1511552120
JZUE01000024
Betaproteobacteria
Aquincola tertiaricarbonis MIMtkpLc11 [JZUE]
22648
22723
+
Ala
CGC
[ENA]
¡û
>W11150931
AEWG01000131
Betaproteobacteria
Rubrivivax benzoatilyticus JA2 [AEWG]
5347
5422
+
Ala
CGC
[ENA]
¡û
>C121001103
AP012320
Betaproteobacteria
Rubrivivax gelatinosus IL144 [AP012320]
3666293
3666368
+
Ala
CGC
[Ensembl]
¡û
>W121036348
AHLZ01000002
Betaproteobacteria
Burkholderiales bacterium JOSHI_001 [AHLZ]
2962900
2962975
+
Ala
CGC
[ENA]
¡û
>W121060101
AJFF01000121
Betaproteobacteria
Rubrivivax gelatinosus CBS [AJFF]
3388
3463
+
Ala
CGC
[ENA]
¡û
>W1610753692
LNET01000055
Betaproteobacteria
Burkholderiales bacterium Ga0077543 [LNET]
94306
94381
+
Ala
CGC
[ENA]
¡û
Identical group No.544481 (2 seq.)
>WENV181288243
OFGY01031975
[OFGY] soil metagenome; Clay
233
158
-
Ala
CGC
[ENA]
¢þ
>WENV11100212
ADZX01000398
Sediment metagenome
9417
9492
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK