tRNA genes clustered and arranged according to each identical group

Sediment metagenome

Anticodon = CGC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.465552 (65 seq.)
>W1710893426 LNET01000055 Betaproteobacteria Burkholderiales bacterium Ga0077543 [LNET] 94306 94381 + Ala CGC [ENA] ¡û
>W1711387283 MEGM01000137 Betaproteobacteria Rubrivivax sp. SCN 70-15 [MEGM] 8665 8740 + Ala CGC [ENA] ¡û
>W1711793380 MWLO01000153 Betaproteobacteria Ideonella sp. A 288 A 288 [MWLO] 49173 49248 + Ala CGC [ENA] ¡û
>W131214611 ATUI01000007 Betaproteobacteria Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 [ATUI] 52955 53030 + Ala CGC [ENA] ¡û
>WENV180016502 FSVG01001143 [FSVG] metagenome; soil 5422 5497 + Ala CGC [ENA] ¢þ
>WENV180016866 FSVX01001292 [FSVX] metagenome; soil 2315 2390 + Ala CGC [ENA] ¢þ
>WENV180016925 FSWB01000370 [FSWB] metagenome; soil 4826 4751 - Ala CGC [ENA] ¢þ
>WENV180016931 FSWB01000541 [FSWB] metagenome; soil 10076 10151 + Ala CGC [ENA] ¢þ
>WENV180017765 FSXQ01001647 [FSXQ] metagenome; soil 16599 16672 + Ala CGC [ENA] ¢þ
>WENV180017770 FSXQ01001893 [FSXQ] metagenome; soil 1343 1268 - Ala CGC [ENA] ¢þ
>WENV180019434 FTBV01002261 [FTBV] metagenome; soil 11705 11780 + Ala CGC [ENA] ¢þ
>WENV180019703 FTCI01000041 [FTCI] metagenome; soil 2739 2814 + Ala CGC [ENA] ¢þ
>WENV180019705 FTCI01000091 [FTCI] metagenome; soil 289 364 + Ala CGC [ENA] ¢þ
>WENV180019711 FTCK01000043 [FTCK] metagenome; soil 3088 3013 - Ala CGC [ENA] ¢þ
>WENV180019715 FTCK01000099 [FTCK] metagenome; soil 2414 2339 - Ala CGC [ENA] ¢þ
>WENV180020567 FTCZ01006213 [FTCZ] metagenome; soil 4511 4586 + Ala CGC [ENA] ¢þ
>WENV180020921 FTDG01002423 [FTDG] metagenome; soil 16288 16213 - Ala CGC [ENA] ¢þ
>WENV180020936 FTDG01003087 [FTDG] metagenome; soil 560 635 + Ala CGC [ENA] ¢þ
>WENV180020975 FTDG01004203 [FTDG] metagenome; soil 9281 9206 - Ala CGC [ENA] ¢þ
>WENV180023802 FTIF01000584 [FTIF] metagenome; soil 13241 13166 - Ala CGC [ENA] ¢þ
>WENV180023803 FTIF01000584 [FTIF] metagenome; soil 12747 12672 - Ala CGC [ENA] ¢þ
>WENV180023878 FTIF01002948 [FTIF] metagenome; soil 17685 17760 + Ala CGC [ENA] ¢þ
>WENV180023981 FTIF01005432 [FTIF] metagenome; soil 1423 1348 - Ala CGC [ENA] ¢þ
>WENV180024079 FTIF01028275 [FTIF] metagenome; soil 284 359 + Ala CGC [ENA] ¢þ
>WENV180025228 FTIN01005292 [FTIN] metagenome; soil 22 97 + Ala CGC [ENA] ¢þ
>WENV180025424 FTIP01003439 [FTIP] metagenome; soil 4466 4391 - Ala CGC [ENA] ¢þ
>WENV180025430 FTIP01003958 [FTIP] metagenome; soil 119 194 + Ala CGC [ENA] ¢þ
>WENV180025439 FTIP01004486 [FTIP] metagenome; soil 432 507 + Ala CGC [ENA] ¢þ
>WENV180025479 FTIP01013389 [FTIP] metagenome; soil 192 267 + Ala CGC [ENA] ¢þ
>WENV180025497 FTIP01023036 [FTIP] metagenome; soil 481 556 + Ala CGC [ENA] ¢þ
>WENV180025501 FTIP01024112 [FTIP] metagenome; soil 1456 1531 + Ala CGC [ENA] ¢þ
>WENV180025502 FTIP01024229 [FTIP] metagenome; soil 712 637 - Ala CGC [ENA] ¢þ
>WENV180025534 FTIP01043675 [FTIP] metagenome; soil 218 293 + Ala CGC [ENA] ¢þ
>WENV180025666 FTIP01283316 [FTIP] metagenome; soil 276 201 - Ala CGC [ENA] ¢þ
>WENV180025721 FTIQ01001382 [FTIQ] metagenome; soil 1454 1529 + Ala CGC [ENA] ¢þ
>WENV180026224 FTIR01447413 [FTIR] metagenome; soil 6804 6729 - Ala CGC [ENA] ¢þ
>WENV180026233 FTIR01452730 [FTIR] metagenome; soil 88612 88537 - Ala CGC [ENA] ¢þ
>WENV180028086 FTIZ01714492 [FTIZ] metagenome; soil 2 77 + Ala CGC [ENA] ¢þ
>WENV180030552 FTJN01000071 [FTJN] metagenome; soil 44364 44439 + Ala CGC [ENA] ¢þ
>WENV180032742 FTKD01000300 [FTKD] metagenome; soil 11154 11079 - Ala CGC [ENA] ¢þ
>WENV180034066 FTKM01413662 [FTKM] metagenome; soil 345 270 - Ala CGC [ENA] ¢þ
>WENV180035008 FTKT01000091 [FTKT] metagenome; soil 55677 55602 - Ala CGC [ENA] ¢þ
>WENV180035138 FTKT01002739 [FTKT] metagenome; soil 123 48 - Ala CGC [ENA] ¢þ
>WENV180035173 FTKT01003379 [FTKT] metagenome; soil 2864 2789 - Ala CGC [ENA] ¢þ
>WENV180035336 FTKT01256150 [FTKT] metagenome; soil 435 360 - Ala CGC [ENA] ¢þ
>WENV180035412 FTKW01000017 [FTKW] metagenome; soil 18085 18010 - Ala CGC [ENA] ¢þ
>WENV181188369 OEOE01099846 [OEOE] activated sludge metagenome; Activated Sludge 270 345 + Ala CGC [ENA] ¢þ
>WENV181227148 OFDN01002375 [OFDN] hot springs metagenome; Water 3218 3293 + Ala CGC [ENA] ¢þ
>WENV183697228 OUNJ010097972 [OUNJ] metagenome; soil 979 904 - Ala CGC [ENA] ¢þ
>WENV183697239 OUNJ010124119 [OUNJ] metagenome; soil 99 174 + Ala CGC [ENA] ¢þ
>WENV183697335 OUNJ010433176 [OUNJ] metagenome; soil 8 83 + Ala CGC [ENA] ¢þ
>WENV170552390 CXWJ01061585 [CXWJ] wastewater metagenome; activated sludge 1345 1420 + Ala CGC [ENA] ¢þ
>WENV170553901 CXWK01037019 [CXWK] wastewater metagenome; activated sludge 228 153 - Ala CGC [ENA] ¢þ
>WENV170639873 JFJP01010792 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 2225 2150 - Ala CGC [ENA] ¢þ
>WENV170708980 LNFM01000056 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 87483 87408 - Ala CGC [ENA] ¢þ
>WENV170711649 LNFM01006311 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 13706 13781 + Ala CGC [ENA] ¢þ
>WENV170713176 LNFM01025562 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 5190 5265 + Ala CGC [ENA] ¢þ
>ENV09001153 ABSQ01039615 Freshwater sediment metagenome lwMethenol_C1 830 755 - Ala CGC [ENA] ¡û
>WENV11100224 ADZX01000600 Sediment metagenome 6932 6857 - Ala CGC [ENA] ¡û
>W1511552120 JZUE01000024 Betaproteobacteria Aquincola tertiaricarbonis MIMtkpLc11 [JZUE] 22648 22723 + Ala CGC [ENA] ¡û
>W11150931 AEWG01000131 Betaproteobacteria Rubrivivax benzoatilyticus JA2 [AEWG] 5347 5422 + Ala CGC [ENA] ¡û
>C121001103 AP012320 Betaproteobacteria Rubrivivax gelatinosus IL144 [AP012320] 3666293 3666368 + Ala CGC [Ensembl] ¡û
>W121036348 AHLZ01000002 Betaproteobacteria Burkholderiales bacterium JOSHI_001 [AHLZ] 2962900 2962975 + Ala CGC [ENA] ¡û
>W121060101 AJFF01000121 Betaproteobacteria Rubrivivax gelatinosus CBS [AJFF] 3388 3463 + Ala CGC [ENA] ¡û
>W1610753692 LNET01000055 Betaproteobacteria Burkholderiales bacterium Ga0077543 [LNET] 94306 94381 + Ala CGC [ENA] ¡û
Identical group No.544481 (2 seq.)
>WENV181288243 OFGY01031975 [OFGY] soil metagenome; Clay 233 158 - Ala CGC [ENA] ¢þ
>WENV11100212 ADZX01000398 Sediment metagenome 9417 9492 + Ala CGC [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK