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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Sediment metagenome
Anticodon = GAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408649 (1 seq.)
>WENV11100197
ADZX01000047
Sediment metagenome
66
142
+
Phe
GAA
[ENA]
¡û
Identical group No.458280 (19 seq.)
>W1711420524
MHUY01000011
Unclassified
Candidatus Yonathbacteria bacterium RIFOXYC2_FULL_47_9 [MHUY]
12845
12920
+
Phe
GAA
[ENA]
¡û
>W1711582404
MNVN01000012
Unclassified
Candidatus Nomurabacteria bacterium CG1_02_43_90 [MNVN]
22270
22195
-
Phe
GAA
[ENA]
¡û
>W1711584780
MNYX01000029
Unclassified
Candidatus Nomurabacteria bacterium CG2_30_43_9 [MNYX]
5858
5783
-
Phe
GAA
[ENA]
¡û
>WENV180273000
OBEQ012438160
[OBEQ] groundwater metagenome; groundwater
788
713
-
Phe
GAA
[ENA]
¢þ
>WENV181390656
OFRO01081837
[OFRO] wastewater metagenome; Exp Tend NO 10WW
187
112
-
Phe
GAA
[ENA]
¢þ
>W1910735227
MHLI01000020
Unclassified
Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_01_FULL_49_22 [MHLI]
12180
12107
-
Phe
GAA
[ENA]
¡û
>W1910735351
MHLM01000007
Unclassified
Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_02_FULL_50_18 [MHLM]
12146
12073
-
Phe
GAA
[ENA]
¡û
>W1910741433
MHUR01000018
Unclassified
Candidatus Yonathbacteria bacterium RIFCSPHIGHO2_01_FULL_44_41 [MHUR]
20056
19981
-
Phe
GAA
[ENA]
¡û
>W1910741498
MHUT01000012
Unclassified
Candidatus Yonathbacteria bacterium RIFCSPHIGHO2_02_FULL_44_14 [MHUT]
20015
19940
-
Phe
GAA
[ENA]
¡û
>W1910741518
MHUU01000001
Unclassified
Candidatus Yonathbacteria bacterium RIFCSPLOWO2_01_FULL_43_20 [MHUU]
19994
19919
-
Phe
GAA
[ENA]
¡û
>W1910741597
MHUW01000003
Unclassified
Candidatus Yonathbacteria bacterium RIFCSPLOWO2_01_FULL_47_33b [MHUW]
8898
8825
-
Phe
GAA
[ENA]
¡û
>WENV11100229
ADZX01000655
Sediment metagenome
84
9
-
Phe
GAA
[ENA]
¡û
>W1511607143
LCCI01000009
Unclassified
Parcubacteria group bacterium GW2011_GWC1_42_11 GW2011_GWC1_42_11 [LCCI]
18816
18891
+
Phe
GAA
[ENA]
¡û
>W1511607879
LCDG01000005
Unclassified
Candidatus Nomurabacteria bacterium GW2011_GWC2_42_20 bacterium GW2011_GWC2_42_20 [LCDG]
9564
9489
-
Phe
GAA
[ENA]
¡û
>W1511610189
LCGC01000017
Unclassified
Candidatus Nomurabacteria bacterium GW2011_GWB1_43_20 bacterium GW2011_GWB1_43_20 [LCGC]
1456
1531
+
Phe
GAA
[ENA]
¡û
>W1511611135
LCHH01000007
Unclassified
Candidatus Nomurabacteria bacterium GW2011_GWD1_44_10 bacterium GW2011_GWD1_44_10 [LCHH]
5867
5794
-
Phe
GAA
[ENA]
¡û
>W1511611364
LCHP01000002
Unclassified
Candidatus Nomurabacteria bacterium GW2011_GWB1_44_12 bacterium GW2011_GWB1_44_12 [LCHP]
67983
68056
+
Phe
GAA
[ENA]
¡û
>W1511611425
LCHR01000002
Unclassified
Parcubacteria group bacterium GW2011_GWA1_44_13 GW2011_GWA1_44_13 [LCHR]
68107
68180
+
Phe
GAA
[ENA]
¡û
>W1511612268
LCIS01000004
Unclassified
Parcubacteria group bacterium GW2011_GWC1_44_26 GW2011_GWC1_44_26 [LCIS]
1672
1599
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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