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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Sediment metagenome
Anticodon = GAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276898 (3 seq.)
>W1711420526
MHUY01000011
Unclassified
Candidatus Yonathbacteria bacterium RIFOXYC2_FULL_47_9 [MHUY]
20173
20249
+
Val
GAC
[ENA]
¡û
>W1910741595
MHUW01000003
Unclassified
Candidatus Yonathbacteria bacterium RIFCSPLOWO2_01_FULL_47_33b [MHUW]
2325
2401
+
Val
GAC
[ENA]
¡û
>WENV11100235
ADZX01000753
Sediment metagenome
2203
2127
-
Val
GAC
[ENA]
¡û
Identical group No.745870 (1 seq.)
>WENV11100220
ADZX01000562
Sediment metagenome
830
756
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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