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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Sediment metagenome
Anticodon = GGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467776 (49 seq.)
>W1710879924
LMRZ01000003
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
266147
266072
-
Ala
GGC
[ENA]
¡û
>W1710880227
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
148921
148846
-
Ala
GGC
[ENA]
¡û
>W1711021445
LQZG01000003
Actinomycetota
Janibacter melonis [LQZG]
215237
215312
+
Ala
GGC
[ENA]
¡û
>C171022213
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
1156549
1156624
+
Ala
GGC
-
¡û
>WENV180284974
OBID01179337
[OBID] metagenome; sludge
251
178
-
Ala
GGC
[ENA]
¢þ
>WENV180291521
OBIV01074559
[OBIV] soil metagenome; Clay
106
180
+
Ala
GGC
[ENA]
¢þ
>WENV180394080
OBPR01057859
[OBPR] marine metagenome; ENVO:00002042
277
204
-
Ala
GGC
[ENA]
¢þ
>W141039289
ALWX01000014
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
163562
163487
-
Ala
GGC
[ENA]
¡û
>WENV180690260
OCZS010001470
[OCZS] soil metagenome; soil
3257
3183
-
Ala
GGC
[ENA]
¢þ
>WENV181166353
OEIU01000122
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
55150
55224
+
Ala
GGC
[ENA]
¢þ
>WENV181173298
OEIV011359341
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
13
86
+
Ala
GGC
[ENA]
¢þ
>WENV181188720
OEOE01308925
[OEOE] activated sludge metagenome; Activated Sludge
120
193
+
Ala
GGC
[ENA]
¢þ
>WENV181189461
OEOF01052163
[OEOF] activated sludge metagenome; Activated Sludge
370
295
-
Ala
GGC
[ENA]
¢þ
>WENV181390550
OFRO01064400
[OFRO] wastewater metagenome; Exp Tend NO 10WW
599
525
-
Ala
GGC
[ENA]
¢þ
>W141242907
CAIZ01000099
Actinomycetota
Phycicoccus elongatus Lp2 [CAIZ]
73
1
-
Ala
GGC
[ENA]
¡û
>W141242955
CAJA01000190
Actinomycetota
Tetrasphaera australiensis Ben110 [CAJA]
4154
4229
+
Ala
GGC
[ENA]
¡û
>W141243040
CAJC01000068
Actinomycetota
Tetrasphaera jenkinsii Ben 74 [CAJC]
9663
9588
-
Ala
GGC
[ENA]
¡û
>WENV170009932
APMI01005427
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV170010744
APMI01027261
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1898
1823
-
Ala
GGC
[ENA]
¢þ
>WENV170010840
APMI01031162
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1296
1221
-
Ala
GGC
[ENA]
¢þ
>WENV170010954
APMI01036147
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3731
3804
+
Ala
GGC
[ENA]
¢þ
>WENV170973956
MTKY01052124
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
20149
20074
-
Ala
GGC
[ENA]
¢þ
>WENV170979953
MTKZ01117040
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
831
906
+
Ala
GGC
[ENA]
¢þ
>C191147728
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
1921255
1921180
-
Ala
GGC
-
¡û
>C191150926
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
2618553
2618479
-
Ala
GGC
-
¡û
>C191158393
CP038213
Actinomycetota
Ornithinimicrobium flavum CPCC 203535 [CP038213]
2357164
2357091
-
Ala
GGC
-
¡û
>W141766750
JOEE01000004
Actinomycetota
Phycicoccus jejuensis [JOEE]
368580
368655
+
Ala
GGC
[ENA]
¡û
>W1911533140
OKQN01000011
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
271103
271029
-
Ala
GGC
[ENA]
¡û
>W1911584621
PIPF01000002
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
76085
76160
+
Ala
GGC
[ENA]
¡û
>W1810173621
PJNE01000001
Actinomycetota
Phycicoccus duodecadis DSM 12806 [PJNE]
648503
648430
-
Ala
GGC
[ENA]
¡û
>W1810701946
QMFW01000284
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
2333
2408
+
Ala
GGC
[ENA]
¡û
>C151090453
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2186484
2186559
+
Ala
GGC
-
¡û
>WENV11100216
ADZX01000429
Sediment metagenome
1565
1640
+
Ala
GGC
[ENA]
¡û
>W1610068264
BCRE01000120
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
11392
11319
-
Ala
GGC
[ENA]
¡û
>W1610069628
BCSQ01000029
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14244
14319
+
Ala
GGC
[ENA]
¡û
>W1610069732
BCSS01000055
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
6284
6209
-
Ala
GGC
[ENA]
¡û
>W1610072295
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
562120
562045
-
Ala
GGC
[ENA]
¡û
>W1610078151
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
535296
535221
-
Ala
GGC
[ENA]
¡û
>W121124421
BAFE01000030
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
39352
39277
-
Ala
GGC
[ENA]
¡û
>W1610742270
LMRZ01000003
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
266147
266072
-
Ala
GGC
[ENA]
¡û
>W1610742573
LMSE01000003
Actinomycetota
Tetrasphaera sp. Soil756 [LMSE]
148921
148846
-
Ala
GGC
[ENA]
¡û
>W1610869733
LQZG01000003
Actinomycetota
Janibacter melonis [LQZG]
215237
215312
+
Ala
GGC
[ENA]
¡û
>W1710065637
BCRE01000120
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
11392
11319
-
Ala
GGC
[ENA]
¡û
>W1710067001
BCSQ01000029
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14244
14319
+
Ala
GGC
[ENA]
¡û
>W1710067105
BCSS01000055
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
6284
6209
-
Ala
GGC
[ENA]
¡û
>W1710069497
BCUV01000006
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
562120
562045
-
Ala
GGC
[ENA]
¡û
>W1710076710
BDAR01000008
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
535296
535221
-
Ala
GGC
[ENA]
¡û
>W1710561681
FOOI01000016
Actinomycetota
Actinopolymorpha cephalotaxi [FOOI]
152432
152507
+
Ala
GGC
[ENA]
¡û
>W1710606079
FWXN01000001
Actinomycetota
Janibacter indicus [FWXN]
363035
363110
+
Ala
GGC
[ENA]
¡û
Identical group No.604527 (1 seq.)
>WENV11100211
ADZX01000389
Sediment metagenome
630
555
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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