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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = ACG
HIT:
39 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236141 (1 seq.)
>PHG181005174
MF319184
Siphoviridae
Mycobacterium phage GenevaB15 (MF319184)
60292
60370
+
Arg
ACG
[ENA]
¡û
Identical group No.238684 (1 seq.)
>PHG14100975
JF937105
Siphoviridae
Mycobacterium phage Rey (JF937105)
60409
60487
+
Arg
ACG
[ENA]
¡û
Identical group No.239266 (2 seq.)
>PHG181003811
KY223999
Siphoviridae
Mycobacterium phage MrMagoo (KY223999)
60409
60487
+
Arg
ACG
[ENA]
¡û
>PHG181004353
KY783914
Siphoviridae
Mycobacterium phage GardenSalsa (KY783914)
60408
60486
+
Arg
ACG
[ENA]
¡û
Identical group No.252356 (1 seq.)
>PHG181003977
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
61756
61831
+
Arg
ACG
[ENA]
¡û
Identical group No.252555 (1 seq.)
>PHG14101687
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
69260
69337
+
Arg
ACG
[ENA]
¡û
Identical group No.263902 (1 seq.)
>PHG14101490
JQ340389
Siphoviridae
Vibrio phage pVp-1 STSV2 (JQ340389)
42272
42349
+
Arg
ACG
[ENA]
¡û
Identical group No.268260 (1 seq.)
>PHG181007036
MG649966
Siphoviridae
Vibrio phage Ceto (MG649966)
77747
77824
+
Arg
ACG
[ENA]
¡û
Identical group No.268261 (1 seq.)
>PHG181008469
MH576962
Siphoviridae
Streptomyces phage Satis (MH576962)
125449
125524
+
Arg
ACG
[ENA]
¡û
Identical group No.347554 (1 seq.)
>PHG181007813
MH153812
Siphoviridae
Rhodococcus phage Grayson (MH153812)
79902
79976
+
Arg
ACG
[ENA]
¡û
Identical group No.359125 (1 seq.)
>PHG181007803
MH153807
Siphoviridae
Rhodococcus phage Peregrin (MH153807)
80433
80507
+
Arg
ACG
[ENA]
¡û
Identical group No.450693 (1 seq.)
>PHG181007218
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
70452
70526
+
Arg
ACG
[ENA]
¡û
Identical group No.452552 (4 seq.)
>PHG181005404
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
96339
96412
+
Arg
ACG
[ENA]
¡û
>PHG181005486
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
96302
96375
+
Arg
ACG
[ENA]
¡û
>PHG181005522
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
97389
97462
+
Arg
ACG
[ENA]
¡û
>PHG14103307
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
96823
96896
+
Arg
ACG
[ENA]
¡û
Identical group No.504453 (1 seq.)
>PHG181005439
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
97723
97796
+
Arg
ACG
[ENA]
¡û
Identical group No.509340 (2 seq.)
>PHG0100436
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
62139
62212
+
Arg
ACG
[ENA]
¡û
>PHG181000809
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
62198
62271
+
Arg
ACG
[ENA]
¡û
Identical group No.572068 (1 seq.)
>PHG181003943
KY363465
Siphoviridae
Providencia phage vB_PreS_PR1 (KY363465)
35915
35840
-
Arg
ACG
[ENA]
¡û
Identical group No.572814 (4 seq.)
>PHG181008504
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
95871
95944
+
Arg
ACG
[ENA]
¡û
>PHG181008653
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
97264
97337
+
Arg
ACG
[ENA]
¡û
>PHG181008689
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
96503
96576
+
Arg
ACG
[ENA]
¡û
>W1810079374
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
13238
13311
+
Arg
ACG
[ENA]
¡û
Identical group No.581863 (2 seq.)
>PHG181004801
MF001358
Siphoviridae
Enterococcus phage EF1 (MF001358)
44948
45022
+
Arg
ACG
[ENA]
¡û
>PHG181004833
MF001361
Siphoviridae
Enterococcus phage EF5 (MF001361)
72398
72324
-
Arg
ACG
[ENA]
¡û
Identical group No.581867 (2 seq.)
>PHG181005334
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
94547
94620
+
Arg
ACG
[ENA]
¡û
>PHG181005368
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
97360
97433
+
Arg
ACG
[ENA]
¡û
Identical group No.611171 (3 seq.)
>PHG183000080
KP280063
Siphoviridae
Vibrio phage phi 3 (KP280063)
38566
38491
-
Arg
ACG
[ENA]
¡û
>PHG183000722
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
14423
14348
-
Arg
ACG
[ENA]
¡û
>PHG183000726
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
19572
19647
+
Arg
ACG
[ENA]
¡û
Identical group No.612255 (1 seq.)
>PHG14102162
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
148768
148694
-
Arg
ACG
[ENA]
¡û
Identical group No.619433 (1 seq.)
>PHG181007051
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
79432
79507
+
Arg
ACG
[ENA]
¡û
Identical group No.652619 (1 seq.)
>PHG181004238
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
69473
69548
+
Arg
ACG
[ENA]
¡û
Identical group No.669932 (6 seq.)
>WENV182395143
OIEK01001115
[OIEK] human gut metagenome; human gut
975
901
-
Arg
ACG
[ENA]
¢þ
>WENV182951488
OKVU01000787
[OKVU] human gut metagenome; human gut
1312
1386
+
Arg
ACG
[ENA]
¢þ
>WENV182953270
OKVY01000028
[OKVY] human gut metagenome; human gut
26252
26178
-
Arg
ACG
[ENA]
¢þ
>WENV170657873
JTFP01027582
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
805
879
+
Arg
ACG
[ENA]
¢þ
>PHG181003650
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
36446
36372
-
Arg
ACG
[ENA]
¡û
>PHG181006790
MG459987
Siphoviridae
Klebsiella phage Sugarland (MG459987)
38326
38252
-
Arg
ACG
[ENA]
¡û
Identical group No.684267 (2 seq.)
>PHG181007142
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
62178
62252
+
Arg
ACG
[ENA]
¡û
>PHG181007154
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
60170
60244
+
Arg
ACG
[ENA]
¡û
Identical group No.695889 (1 seq.)
>PHG181006366
MF979564
Siphoviridae
Pectobacterium phage DU_PP_V (MF979564)
32369
32295
-
Arg
ACG
[ENA]
¡û
Identical group No.697188 (1 seq.)
>PHG14101887
JX195166
Siphoviridae
Pectobacterium phage My1 (JX195166)
37906
37832
-
Arg
ACG
[ENA]
¡û
Identical group No.703718 (2 seq.)
>PHG183000054
KM979355
Siphoviridae
Enterobacteria phage DT571/2 (KM979355)
25631
25557
-
Arg
ACG
[ENA]
¡û
>PHG183001599
MH203051
Siphoviridae
Escherichia phage Gostya9 (MH203051)
26705
26631
-
Arg
ACG
[ENA]
¡û
Identical group No.703728 (4 seq.)
>PHG181004380
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
30640
30566
-
Arg
ACG
[ENA]
¡û
>PHG181006462
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
13351
13425
+
Arg
ACG
[ENA]
¡û
>PHG181008255
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
77773
77847
+
Arg
ACG
[ENA]
¡û
>PHG14103113
KM236244
Siphoviridae
Salmonella virus Stitch LIKBL0011 (KM236244)
30046
29972
-
Arg
ACG
[ENA]
¡û
Identical group No.706534 (16 seq.)
>PHG0100373
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
31558
31484
-
Arg
ACG
[ENA]
¡û
>PHG181002418
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
31173
31099
-
Arg
ACG
[ENA]
¡û
>PHG181002509
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
30283
30209
-
Arg
ACG
[ENA]
¡û
>PHG181004858
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
90426
90500
+
Arg
ACG
[ENA]
¡û
>PHG181005757
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181005780
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181005803
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181005826
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181005849
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181005872
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
30600
30526
-
Arg
ACG
[ENA]
¡û
>PHG181008072
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
76897
76971
+
Arg
ACG
[ENA]
¡û
>PHG181008099
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
76851
76925
+
Arg
ACG
[ENA]
¡û
>PHG181008146
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
77868
77942
+
Arg
ACG
[ENA]
¡û
>PHG181008206
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
82847
82921
+
Arg
ACG
[ENA]
¡û
>PHG181008228
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
76897
76971
+
Arg
ACG
[ENA]
¡û
>PHG14100417
HE956708
Siphoviridae
Yersinia phage phiR201 TP-J34 (HE956708)
30555
30481
-
Arg
ACG
[ENA]
¡û
Identical group No.731974 (1 seq.)
>PHG181008400
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
70966
71038
+
Arg
ACG
[ENA]
¡û
Identical group No.738450 (1 seq.)
>PHG181006041
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
42185
42111
-
Arg
ACG
[ENA]
¡û
Identical group No.744254 (1 seq.)
>PHG181001399
KT070867
Siphoviridae
Bacillus phage PBC2 (KT070867)
148995
148922
-
Arg
ACG
[ENA]
¡û
Identical group No.750797 (1 seq.)
>PHG181008125
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
79946
80020
+
Arg
ACG
[ENA]
¡û
Identical group No.751561 (1 seq.)
>PHG14102280
KC821607
Siphoviridae
Cellulophaga phage phi19:1 (KC821607)
31424
31496
+
Arg
ACG
[ENA]
¡û
Identical group No.755896 (1 seq.)
>PHG181006634
MG065692
Siphoviridae
Campylobacter phage C13 (MG065692)
9426
9352
-
Arg
ACG
[ENA]
¡û
Identical group No.755909 (1 seq.)
>PHG181008049
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
78195
78269
+
Arg
ACG
[ENA]
¡û
Identical group No.760721 (1 seq.)
>PHG182000077
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
98302
98374
+
Arg
ACG
[ENA]
¡û
Identical group No.778885 (1 seq.)
>PHG181001730
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
58151
58225
+
Arg
ACG
[ENA]
¡û
Identical group No.778909 (1 seq.)
>PHG181008574
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
99242
99314
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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