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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525403 (11 seq.)
>PHG181004071
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
51434
51509
+
Val
CAC
[ENA]
¡û
>PHG181004092
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
51909
51984
+
Val
CAC
[ENA]
¡û
>PHG181004115
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
51306
51381
+
Val
CAC
[ENA]
¡û
>PHG181004138
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
56442
56517
+
Val
CAC
[ENA]
¡û
>PHG181004160
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
52025
52100
+
Val
CAC
[ENA]
¡û
>PHG181004183
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
52465
52540
+
Val
CAC
[ENA]
¡û
>PHG14101664
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
51257
51332
+
Val
CAC
[ENA]
¡û
>PHG14101706
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
52107
52182
+
Val
CAC
[ENA]
¡û
>PHG14101727
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
50699
50774
+
Val
CAC
[ENA]
¡û
>PHG14101747
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
51981
52056
+
Val
CAC
[ENA]
¡û
>PHG14101822
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
155832
155757
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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