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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = CAG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.97202 (1 seq.)
>PHG14101677
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
62115
62202
+
Leu
CAG
[ENA]
¡û
Identical group No.146659 (1 seq.)
>PHG14101760
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
50550
50636
+
Leu
CAG
[ENA]
¡û
Identical group No.164393 (4 seq.)
>PHG181004108
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
49644
49729
+
Leu
CAG
[ENA]
¡û
>PHG14101657
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
49003
49088
+
Leu
CAG
[ENA]
¡û
>PHG14101699
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
49851
49936
+
Leu
CAG
[ENA]
¡û
>PHG14101720
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
49038
49123
+
Leu
CAG
[ENA]
¡û
Identical group No.189801 (2 seq.)
>PHG181001777
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
17226
17310
+
Leu
CAG
[ENA]
¡û
>PHG181007579
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
17272
17356
+
Leu
CAG
[ENA]
¡û
Identical group No.217841 (1 seq.)
>PHG183000675
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
70382
70466
+
Leu
CAG
[ENA]
¡û
Identical group No.221662 (7 seq.)
>PHG181004066
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
49782
49865
+
Leu
CAG
[ENA]
¡û
>PHG181004087
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
50257
50340
+
Leu
CAG
[ENA]
¡û
>PHG181004133
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
54790
54873
+
Leu
CAG
[ENA]
¡û
>PHG181004154
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
50374
50457
+
Leu
CAG
[ENA]
¡û
>PHG181004177
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
50814
50897
+
Leu
CAG
[ENA]
¡û
>PHG14101741
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
50330
50413
+
Leu
CAG
[ENA]
¡û
>PHG14101816
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
157483
157400
-
Leu
CAG
[ENA]
¡û
Identical group No.271562 (41 seq.)
>PHG0100205
AY129332
Siphoviridae
Mycobacterium virus Bxz2 PaP3 (AY129332)
4157
4231
+
Leu
CAG
[ENA]
¡û
>PHG181000792
KP017310
Siphoviridae
Mycobacterium phage Phoxy (KP017310)
4147
4221
+
Leu
CAG
[ENA]
¡û
>PHG181000795
KP017311
Siphoviridae
Mycobacterium phage Spike509 (KP017311)
4147
4221
+
Leu
CAG
[ENA]
¡û
>PHG181000814
KP027202
Siphoviridae
Mycobacterium phage Taurus (KP027202)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181001588
KT359365
Siphoviridae
Mycobacterium phage DaHudson (KT359365)
4057
4131
+
Leu
CAG
[ENA]
¡û
>PHG181001669
KT381277
Siphoviridae
Mycobacterium phage Wooldri (KT381277)
3976
4050
+
Leu
CAG
[ENA]
¡û
>PHG181002004
KU255188
Siphoviridae
Mycobacterium phage JenCasNa (KU255188)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181002098
KU578077
Siphoviridae
Mycobacterium phage Marie (KU578077)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181002433
KU984914
Siphoviridae
Mycobacterium phage Malinsilva (KU984914)
4057
4131
+
Leu
CAG
[ENA]
¡û
>PHG181002436
KU985091
Siphoviridae
Mycobacterium phage Hercules11 (KU985091)
4072
4146
+
Leu
CAG
[ENA]
¡û
>PHG181003390
KX507362
Siphoviridae
Mycobacterium phage Aglet (KX507362)
4066
4140
+
Leu
CAG
[ENA]
¡û
>PHG181003393
KX523125
Siphoviridae
Mycobacterium phage BuzzBuzz (KX523125)
4147
4221
+
Leu
CAG
[ENA]
¡û
>PHG181003474
KX664448
Siphoviridae
Mycobacterium phage Watson (KX664448)
4057
4131
+
Leu
CAG
[ENA]
¡û
>PHG181003487
KX670788
Siphoviridae
Mycobacterium phage Louie6 (KX670788)
4147
4221
+
Leu
CAG
[ENA]
¡û
>PHG181003606
KX808129
Siphoviridae
Mycobacterium phage Sabinator (KX808129)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181004465
KY965063
Siphoviridae
Mycobacterium phage PurpleHaze (KY965063)
4097
4171
+
Leu
CAG
[ENA]
¡û
>PHG181005129
MF185729
Siphoviridae
Mycobacterium phage KADY (MF185729)
4147
4221
+
Leu
CAG
[ENA]
¡û
>PHG181005144
MF185732
Siphoviridae
Mycobacterium phage Stagni (MF185732)
4067
4141
+
Leu
CAG
[ENA]
¡û
>PHG181005147
MF185733
Siphoviridae
Mycobacterium phage StepMih (MF185733)
4058
4132
+
Leu
CAG
[ENA]
¡û
>PHG181007245
MG757161
Siphoviridae
Mycobacterium phage LugYA (MG757161)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181007409
MG925355
Siphoviridae
Mycobacterium phage OlanP (MG925355)
4278
4352
+
Leu
CAG
[ENA]
¡û
>PHG181007597
MH020238
Siphoviridae
Mycobacterium phage Lilith (MH020238)
4058
4132
+
Leu
CAG
[ENA]
¡û
>PHG181007754
MH077583
Siphoviridae
Mycobacterium phage PGHhamlin (MH077583)
4057
4131
+
Leu
CAG
[ENA]
¡û
>PHG181008016
MH338240
Siphoviridae
Mycobacterium phage Sabia (MH338240)
4058
4132
+
Leu
CAG
[ENA]
¡û
>PHG181008278
MH371121
Siphoviridae
Mycobacterium phage Phranny (MH371121)
4096
4170
+
Leu
CAG
[ENA]
¡û
>PHG181008290
MH399776
Siphoviridae
Mycobacterium phage Grum1 (MH399776)
4056
4130
+
Leu
CAG
[ENA]
¡û
>PHG181008305
MH450119
Siphoviridae
Mycobacterium phage Kalnoky (MH450119)
4098
4172
+
Leu
CAG
[ENA]
¡û
>PHG181008308
MH450124
Siphoviridae
Mycobacterium phage Marius (MH450124)
4098
4172
+
Leu
CAG
[ENA]
¡û
>PHG181008311
MH450126
Siphoviridae
Mycobacterium phage PhishRPhriends (MH450126)
3289
3363
+
Leu
CAG
[ENA]
¡û
>PHG181008314
MH450128
Siphoviridae
Mycobacterium phage Reba (MH450128)
3769
3843
+
Leu
CAG
[ENA]
¡û
>PHG181008346
MH513975
Siphoviridae
Mycobacterium phage Misomonster (MH513975)
4146
4220
+
Leu
CAG
[ENA]
¡û
>PHG181008392
MH536813
Siphoviridae
Mycobacterium phage AugsMagnumOpus (MH536813)
4057
4131
+
Leu
CAG
[ENA]
¡û
>PHG181008460
MH576949
Siphoviridae
Mycobacterium phage BreSam8 (MH576949)
4058
4132
+
Leu
CAG
[ENA]
¡û
>PHG14100561
HM755814
Siphoviridae
Mycobacterium virus Wonder CpV1 (HM755814)
3517
3591
+
Leu
CAG
[ENA]
¡û
>PHG14100902
JF704098
Siphoviridae
Mycobacterium virus JHC117 MB56Spyo045 (JF704098)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG14100904
JF704101
Siphoviridae
Mycobacterium virus Microwolf KLucky39 (JF704101)
4066
4140
+
Leu
CAG
[ENA]
¡û
>PHG14102173
KC661272
Siphoviridae
Mycobacterium phage Methuselah Gb1 (KC661272)
4146
4220
+
Leu
CAG
[ENA]
¡û
>PHG14102558
KF279418
Siphoviridae
Mycobacterium phage Anubis Sarco S13 (KF279418)
3941
4015
+
Leu
CAG
[ENA]
¡û
>PHG14103048
KM101119
Siphoviridae
Mycobacterium phage Tiffany IB4755 (KM101119)
3959
4033
+
Leu
CAG
[ENA]
¡û
>PHG14103068
KM233454
Siphoviridae
Mycobacterium phage MarQuardt LIKBL0011 (KM233454)
4066
4140
+
Leu
CAG
[ENA]
¡û
>PHG14103070
KM233455
Siphoviridae
Mycobacterium phage Farber LIKBL0011 (KM233455)
4058
4132
+
Leu
CAG
[ENA]
¡û
Identical group No.347553 (3 seq.)
>PHG181003362
KX458237
Siphoviridae
Mycobacterium phage Penny1 (KX458237)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181007405
MG925341
Siphoviridae
Mycobacterium phage EpicPhail (MG925341)
4063
4137
+
Leu
CAG
[ENA]
¡û
>PHG181007823
MH155864
Siphoviridae
Mycobacterium phage Beauxregard13 (MH155864)
4063
4137
+
Leu
CAG
[ENA]
¡û
Identical group No.347558 (1 seq.)
>PHG181007974
MH316566
Siphoviridae
Gordonia phage Nedarya (MH316566)
5783
5857
+
Leu
CAG
[ENA]
¡û
Identical group No.391393 (3 seq.)
>PHG181008433
MH536825
Siphoviridae
Mycobacterium phage Ollie (MH536825)
3931
4005
+
Leu
CAG
[ENA]
¡û
>PHG14100925
JF704114
Siphoviridae
Mycobacterium phage Vix Oosterbaan (JF704114)
4145
4219
+
Leu
CAG
[ENA]
¡û
>PHG14102189
KC661281
Siphoviridae
Mycobacterium phage Jobu08 Gb1 (KC661281)
4129
4203
+
Leu
CAG
[ENA]
¡û
Identical group No.407112 (1 seq.)
>PHG14200183
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
59015
59089
+
Leu
CAG
[ENA]
¡û
Identical group No.429071 (2 seq.)
>PHG181001732
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
58640
58714
+
Leu
CAG
[ENA]
¡û
>PHG14101324
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
58492
58566
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK