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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = CGT
HIT:
27 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.251086 (2 seq.)
>PHG0100074
AJ006589
Siphoviridae
Streptomyces virus phiC31 Norwich stock (AJ006589)
40702
40777
+
Thr
CGT
[ENA]
¡û
>PHG0100648
X91149
Siphoviridae
Streptomyces virus phiC31 Norwich stock (X91149)
311
386
+
Thr
CGT
[ENA]
¡û
Identical group No.300060 (5 seq.)
>PHG181005112
MF185726
Siphoviridae
Mycobacterium phage Appletree2 (MF185726)
60849
60923
+
Thr
CGT
[ENA]
¡û
>PHG14100513
HM152763
Siphoviridae
Mycobacterium virus Bron AO7543 (HM152763)
60938
61012
+
Thr
CGT
[ENA]
¡û
>PHG14100908
JF704108
Siphoviridae
Mycobacterium virus Joedirt Phipps (JF704108)
61883
61957
+
Thr
CGT
[ENA]
¡û
>PHG14100918
JF704113
Siphoviridae
Mycobacterium phage UPIE Oosterbaan (JF704113)
61281
61355
+
Thr
CGT
[ENA]
¡û
>PHG14101178
JN600672
Siphoviridae
Mycobacterium phage Fezzik vB_EcoM_CBA120 (JN600672)
61770
61844
+
Thr
CGT
[ENA]
¡û
Identical group No.348968 (1 seq.)
>PHG14101883
JX182372
Siphoviridae
Streptomyces virus TG1 (JX182372)
39556
39630
+
Thr
CGT
[ENA]
¡û
Identical group No.483811 (2 seq.)
>PHG181001977
KU234099
Siphoviridae
Mycobacterium phage MkaliMitinis3 (KU234099)
63152
63225
+
Thr
CGT
[ENA]
¡û
>PHG14102467
KF024731
Siphoviridae
Mycobacterium phage Crossroads phi47:1 (KF024731)
63172
63245
+
Thr
CGT
[ENA]
¡û
Identical group No.504485 (2 seq.)
>PHG181001783
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
20632
20707
+
Thr
CGT
[ENA]
¡û
>PHG181007585
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
20674
20749
+
Thr
CGT
[ENA]
¡û
Identical group No.523546 (1 seq.)
>PHG181008293
MH399779
Siphoviridae
Microbacterium phage Jacko (MH399779)
7717
7790
+
Thr
CGT
[ENA]
¡û
Identical group No.562764 (5 seq.)
>PHG181003429
KX580961
Siphoviridae
Mycobacterium phage Zakai (KX580961)
63048
63121
+
Thr
CGT
[ENA]
¡û
>PHG181005130
MF185730
Siphoviridae
Mycobacterium phage Miley16 (MF185730)
63338
63411
+
Thr
CGT
[ENA]
¡û
>PHG14100947
JF744988
Siphoviridae
Mycobacterium virus Faith1 (JF744988)
62646
62719
+
Thr
CGT
[ENA]
¡û
>PHG14102174
KC661276
Siphoviridae
Mycobacterium phage Winky Gb1 (KC661276)
63338
63411
+
Thr
CGT
[ENA]
¡û
>PHG14102194
KC691254
Siphoviridae
Mycobacterium phage Breezona Gb1 (KC691254)
63338
63411
+
Thr
CGT
[ENA]
¡û
Identical group No.572077 (4 seq.)
>PHG181002442
KU997639
Siphoviridae
Mycobacterium phage Loadrie (KU997639)
63222
63295
+
Thr
CGT
[ENA]
¡û
>PHG181003378
KX507361
Siphoviridae
Mycobacterium phage Gardann (KX507361)
62844
62917
+
Thr
CGT
[ENA]
¡û
>PHG181004960
MF140422
Siphoviridae
Mycobacterium phage Nicholasp3 (MF140422)
62844
62917
+
Thr
CGT
[ENA]
¡û
>PHG181005118
MF185728
Siphoviridae
Mycobacterium phage Finemlucis (MF185728)
63805
63878
+
Thr
CGT
[ENA]
¡û
Identical group No.572806 (5 seq.)
>PHG181008509
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
16557
16484
-
Thr
CGT
[ENA]
¡û
>PHG181008544
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
16238
16165
-
Thr
CGT
[ENA]
¡û
>PHG181008658
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
16318
16245
-
Thr
CGT
[ENA]
¡û
>PHG181008694
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
16687
16614
-
Thr
CGT
[ENA]
¡û
>W1810079352
PEKU01000042
Actinomycetota
Streptomyces sp. JV178 [PEKU]
7098
7025
-
Thr
CGT
[ENA]
¡û
Identical group No.639011 (1 seq.)
>PHG181008466
MH576962
Siphoviridae
Streptomyces phage Satis (MH576962)
125076
125149
+
Thr
CGT
[ENA]
¡û
Identical group No.652647 (1 seq.)
>PHG181008580
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
16927
16854
-
Thr
CGT
[ENA]
¡û
Identical group No.684226 (5 seq.)
>PHG181001495
KT281794
Siphoviridae
Mycobacterium phage Snenia (KT281794)
62793
62865
+
Thr
CGT
[ENA]
¡û
>PHG181001657
KT372003
Siphoviridae
Mycobacterium phage Lumos (KT372003)
62789
62861
+
Thr
CGT
[ENA]
¡û
>PHG181004926
MF140405
Siphoviridae
Mycobacterium phage Clautastrophe (MF140405)
62792
62864
+
Thr
CGT
[ENA]
¡û
>PHG181004936
MF140413
Siphoviridae
Mycobacterium phage Kingsolomon (MF140413)
62901
62973
+
Thr
CGT
[ENA]
¡û
>PHG181004954
MF140421
Siphoviridae
Mycobacterium phage Nicholas (MF140421)
62901
62973
+
Thr
CGT
[ENA]
¡û
Identical group No.684256 (1 seq.)
>PHG181005408
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
16585
16513
-
Thr
CGT
[ENA]
¡û
Identical group No.684257 (2 seq.)
>PHG181005443
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
17355
17283
-
Thr
CGT
[ENA]
¡û
>PHG181005526
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
16981
16909
-
Thr
CGT
[ENA]
¡û
Identical group No.695893 (1 seq.)
>PHG181006939
MG593803
Siphoviridae
Streptomyces phage Rowa (MG593803)
41934
42006
+
Thr
CGT
[ENA]
¡û
Identical group No.711670 (3 seq.)
>PHG181001485
KT281791
Siphoviridae
Mycobacterium phage Lolly9 (KT281791)
62858
62930
+
Thr
CGT
[ENA]
¡û
>PHG181004943
MF140414
Siphoviridae
Mycobacterium phage Krypton555 (MF140414)
63180
63252
+
Thr
CGT
[ENA]
¡û
>PHG14102458
KF024725
Siphoviridae
Mycobacterium phage Whirlwind phi47:1 (KF024725)
63038
63110
+
Thr
CGT
[ENA]
¡û
Identical group No.719290 (1 seq.)
>PHG181005002
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
15558
15486
-
Thr
CGT
[ENA]
¡û
Identical group No.725997 (1 seq.)
>PHG181008582
MH576973
Siphoviridae
Mycobacterium phage Bromden (MH576973)
64745
64817
+
Thr
CGT
[ENA]
¡û
Identical group No.731980 (1 seq.)
>PHG181008423
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
5046
4974
-
Thr
CGT
[ENA]
¡û
Identical group No.760734 (1 seq.)
>PHG181008388
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
4382
4310
-
Thr
CGT
[ENA]
¡û
Identical group No.779625 (1 seq.)
>PHG14103311
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
16941
16870
-
Thr
CGT
[ENA]
¡û
Identical group No.786859 (3 seq.)
>PHG181001714
KT591489
Siphoviridae
Mycobacterium phage Archie (KT591489)
62616
62687
+
Thr
CGT
[ENA]
¡û
>PHG181003440
KX580962
Siphoviridae
Mycobacterium phage Wilder (KX580962)
62791
62862
+
Thr
CGT
[ENA]
¡û
>PHG181005202
MF324910
Siphoviridae
Mycobacterium phage GuuelaD (MF324910)
62780
62851
+
Thr
CGT
[ENA]
¡û
Identical group No.814997 (2 seq.)
>PHG181005338
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
14427
14356
-
Thr
CGT
[ENA]
¡û
>PHG181005372
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
14418
14347
-
Thr
CGT
[ENA]
¡û
Identical group No.815015 (1 seq.)
>PHG181008622
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
4395
4324
-
Thr
CGT
[ENA]
¡û
Identical group No.833169 (1 seq.)
>PHG181005490
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
16961
16890
-
Thr
CGT
[ENA]
¡û
Identical group No.836941 (1 seq.)
>PHG181004240
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
70588
70661
+
Thr
CGT
[ENA]
¡û
Identical group No.836947 (1 seq.)
>PHG181007237
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
4965
4894
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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