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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = CTA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.193698 (3 seq.)
>PHG0100632
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
Sup
CTA
[ENA]
¡û
>PHG181004774
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
STOP
CTA
[ENA]
¡û
>PHG14103426
M24831
Siphoviridae
Enterobacteria phage phi80 HA2 (M24831)
51
135
+
Sup
CTA
[ENA]
¡û
Identical group No.561453 (1 seq.)
>PHG181006656
MG189906
Siphoviridae
Stenotrophomonas phage vB_SmaS_DLP_5 (MG189906)
50270
50343
+
STOP
CTA
[ENA]
¡û
Identical group No.684268 (2 seq.)
>PHG181007143
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
62795
62869
+
STOP
CTA
[ENA]
¡û
>PHG181007155
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
60691
60765
+
STOP
CTA
[ENA]
¡û
Identical group No.793989 (1 seq.)
>PHG14100468
HM029250
Siphoviridae
Lactococcus phage 949 das13 (HM029250)
46865
46937
+
Sup
CTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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