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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = CTC
HIT:
25 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237648 (1 seq.)
>PHG181004980
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
84530
84606
+
Glu
CTC
[ENA]
¡û
Identical group No.238031 (3 seq.)
>PHG181008518
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
86785
86861
+
Glu
CTC
[ENA]
¡û
>PHG181008667
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
85557
85633
+
Glu
CTC
[ENA]
¡û
>W1810079353
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
2660
2736
+
Glu
CTC
[ENA]
¡û
Identical group No.238313 (1 seq.)
>PHG181008616
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
96734
96810
+
Glu
CTC
[ENA]
¡û
Identical group No.238649 (1 seq.)
>PHG181008483
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
85293
85369
+
Glu
CTC
[ENA]
¡û
Identical group No.238650 (1 seq.)
>PHG181008632
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
86342
86418
+
Glu
CTC
[ENA]
¡û
Identical group No.318963 (2 seq.)
>PHG181001763
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
6542
6618
+
Glu
CTC
[ENA]
¡û
>PHG181007565
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
6541
6617
+
Glu
CTC
[ENA]
¡û
Identical group No.407107 (1 seq.)
>PHG14102397
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
61355
61429
+
Glu
CTC
[ENA]
¡û
Identical group No.450695 (1 seq.)
>PHG181007233
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
85741
85815
+
Glu
CTC
[ENA]
¡û
Identical group No.480681 (4 seq.)
>PHG0300003
AF022214
Siphoviridae
Mycobacterium virus D29 TP-J34 (AF022214)
4523
4596
+
Glu
CTC
[ENA]
¡û
>PHG183000018
AP018480
Siphoviridae
Mycobacterium virus D29 (AP018480)
4523
4596
+
Glu
CTC
[ENA]
¡û
>PHG183000530
KX758538
Siphoviridae
Mycobacterium phage Kerberos (KX758538)
4514
4587
+
Glu
CTC
[ENA]
¡û
>PHG183001716
MH513985
Siphoviridae
Mycobacterium phage Tomathan (MH513985)
4514
4587
+
Glu
CTC
[ENA]
¡û
Identical group No.550967 (2 seq.)
>PHG181003465
KX641263
Siphoviridae
Mycobacterium phage Kalpine (KX641263)
6245
6318
+
Glu
CTC
[ENA]
¡û
>PHG14101133
JN408461
Siphoviridae
Mycobacterium phage Trixie Charlie (JN408461)
6117
6190
+
Glu
CTC
[ENA]
¡û
Identical group No.572042 (1 seq.)
>PHG183000017
AP018476
Siphoviridae
Mycobacterium phage C3 (AP018476)
4513
4586
+
Glu
CTC
[ENA]
¡û
Identical group No.581896 (1 seq.)
>PHG181008417
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
94281
94354
+
Glu
CTC
[ENA]
¡û
Identical group No.592226 (1 seq.)
>PHG181001213
KR063281
Siphoviridae
Gordonia phage GMA2 (KR063281)
58806
58733
-
Glu
CTC
[ENA]
¡û
Identical group No.619407 (2 seq.)
>PHG183000493
KX574455
Siphoviridae
Mycobacterium phage Pomar16 (KX574455)
4555
4628
+
Glu
CTC
[ENA]
¡û
>PHG183000554
KX897981
Siphoviridae
Mycobacterium phage StarStuff (KX897981)
4514
4587
+
Glu
CTC
[ENA]
¡û
Identical group No.627269 (1 seq.)
>PHG181008382
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
90514
90587
+
Glu
CTC
[ENA]
¡û
Identical group No.684276 (2 seq.)
>PHG181001501
KT285706
Siphoviridae
Mycobacterium phage Pioneer (KT285706)
5939
6011
+
Glu
CTC
[ENA]
¡û
>PHG181007388
MG872840
Siphoviridae
Mycobacterium phage Phonnegut (MG872840)
5939
6011
+
Glu
CTC
[ENA]
¡û
Identical group No.684277 (11 seq.)
>PHG181002123
KU613353
Siphoviridae
Mycobacterium phage Catalina (KU613353)
5907
5979
+
Glu
CTC
[ENA]
¡û
>PHG181002315
KU716094
Siphoviridae
Mycobacterium phage Eidsmoe (KU716094)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181002316
KU716095
Siphoviridae
Mycobacterium phage Myxus (KU716095)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003451
KX585252
Siphoviridae
Mycobacterium phage HortumSL17 (KX585252)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003471
KX664447
Siphoviridae
Mycobacterium phage Phaeder (KX664447)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG181003490
KX685355
Siphoviridae
Mycobacterium phage Qobbit (KX685355)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181007365
MG872835
Siphoviridae
Mycobacterium phage Conquerage (MG872835)
5936
6008
+
Glu
CTC
[ENA]
¡û
>PHG181007389
MG872842
Siphoviridae
Mycobacterium phage Scherzo (MG872842)
5939
6011
+
Glu
CTC
[ENA]
¡û
>PHG181008279
MH371122
Siphoviridae
Mycobacterium phage Priya (MH371122)
5937
6009
+
Glu
CTC
[ENA]
¡û
>PHG14100915
JF704110
Siphoviridae
Mycobacterium virus Packman Oosterbaan (JF704110)
5906
5978
+
Glu
CTC
[ENA]
¡û
>PHG14101231
JN699005
Siphoviridae
Mycobacterium virus Alma G (JN699005)
5913
5985
+
Glu
CTC
[ENA]
¡û
Identical group No.750783 (1 seq.)
>PHG181006009
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
81439
81511
+
Glu
CTC
[ENA]
¡û
Identical group No.778893 (1 seq.)
>PHG181004236
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
69204
69278
+
Glu
CTC
[ENA]
¡û
Identical group No.779628 (5 seq.)
>PHG181005381
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
85888
85959
+
Glu
CTC
[ENA]
¡û
>PHG181005416
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
87270
87341
+
Glu
CTC
[ENA]
¡û
>PHG181005465
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
86336
86407
+
Glu
CTC
[ENA]
¡û
>PHG181005499
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
86244
86315
+
Glu
CTC
[ENA]
¡û
>PHG14103288
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
86672
86743
+
Glu
CTC
[ENA]
¡û
Identical group No.793247 (1 seq.)
>PHG181005184
MF319184
Siphoviridae
Mycobacterium phage GenevaB15 (MF319184)
61963
62034
+
Glu
CTC
[ENA]
¡û
Identical group No.794642 (3 seq.)
>PHG0300085
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
63103
63174
+
Glu
CTC
[ENA]
¡û
>PHG183000063
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
63150
63221
+
Glu
CTC
[ENA]
¡û
>PHG183000612
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
62709
62780
+
Glu
CTC
[ENA]
¡û
Identical group No.814994 (2 seq.)
>PHG181005311
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
83499
83570
+
Glu
CTC
[ENA]
¡û
>PHG181005345
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
85797
85868
+
Glu
CTC
[ENA]
¡û
Identical group No.828337 (2 seq.)
>PHG181001738
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
60350
60421
+
Glu
CTC
[ENA]
¡û
>PHG14101330
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
60202
60273
+
Glu
CTC
[ENA]
¡û
Identical group No.836949 (1 seq.)
>PHG181008552
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
86654
86725
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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