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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GAA
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240578 (1 seq.)
>PHG181002427
KU963248
Siphoviridae
Gordonia phage Yvonnetastic (KU963248)
6354
6430
+
Phe
GAA
[ENA]
¡û
Identical group No.240579 (1 seq.)
>PHG181007223
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
73354
73432
+
Phe
GAA
[ENA]
¡û
Identical group No.244053 (5 seq.)
>WENV182395127
OIEK01000768
[OIEK] human gut metagenome; human gut
2194
2117
-
Phe
GAA
[ENA]
¢þ
>WENV182951495
OKVU01000787
[OKVU] human gut metagenome; human gut
5260
5337
+
Phe
GAA
[ENA]
¢þ
>WENV182953277
OKVY01000028
[OKVY] human gut metagenome; human gut
22304
22227
-
Phe
GAA
[ENA]
¢þ
>PHG181003657
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
32730
32653
-
Phe
GAA
[ENA]
¡û
>PHG181006799
MG459987
Siphoviridae
Klebsiella phage Sugarland (MG459987)
33320
33243
-
Phe
GAA
[ENA]
¡û
Identical group No.254333 (1 seq.)
>PHG181002461
KU998245
Siphoviridae
Gordonia phage OneUp (KU998245)
5272
5349
+
Phe
GAA
[ENA]
¡û
Identical group No.262276 (3 seq.)
>PHG181001728
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
57637
57712
+
Phe
GAA
[ENA]
¡û
>PHG14101321
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
57490
57565
+
Phe
GAA
[ENA]
¡û
>PHG14102389
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
57612
57687
+
Phe
GAA
[ENA]
¡û
Identical group No.268253 (1 seq.)
>PHG183001731
MH576962
Siphoviridae
Streptomyces phage Satis (MH576962)
126018
126093
+
Phe
GAA
[ENA]
¡û
Identical group No.323282 (1 seq.)
>PHG0100178
AM419438
Siphoviridae
Archaeal BJ1 virus ATCC 11303-B5 (AM419438)
19972
20048
+
Phe
GAA
[ENA]
¡û
Identical group No.352073 (2 seq.)
>C011852
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
341099
341172
+
Phe
GAA
[Ensembl]
¡û
>PHG0100291
AY459535
Siphoviridae
Lactobacillus prophage Lj965 NCTC11261 (AY459535)
13323
13398
+
Phe
GAA
[ENA]
¡û
Identical group No.373411 (2 seq.)
>WENV180339869
OBLI01009223
[OBLI] pig gut metagenome; faeces
4575
4502
-
Phe
GAA
[ENA]
¢þ
>PHG0100030
AF195902
Siphoviridae
Lactobacillus prophage Lj771 ECOR-9 (AF195902)
13850
13923
+
Phe
GAA
[ENA]
¡û
Identical group No.388342 (6 seq.)
>WENV170560518
CYGL01004396
[CYGL] human gut metagenome;
1569
1642
+
Phe
GAA
[ENA]
¢þ
>PHG181004803
MF001358
Siphoviridae
Enterococcus phage EF1 (MF001358)
50452
50525
+
Phe
GAA
[ENA]
¡û
>PHG181004835
MF001361
Siphoviridae
Enterococcus phage EF5 (MF001361)
66894
66821
-
Phe
GAA
[ENA]
¡û
>W1910283642
FRED01000005
Bacillota
Enterococcus faecium [FRED]
129203
129276
+
Phe
GAA
[ENA]
¡û
>W1910312254
FRXU01000005
Bacillota
Enterococcus faecium [FRXU]
129203
129276
+
Phe
GAA
[ENA]
¡û
>W1810047501
PCFY01000005
Bacillota
Enterococcus faecium Hp_24-3 [PCFY]
129203
129276
+
Phe
GAA
[ENA]
¡û
Identical group No.504383 (2 seq.)
>PHG183000286
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
17381
17456
+
Phe
GAA
[ENA]
¡û
>PHG183001532
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
17427
17502
+
Phe
GAA
[ENA]
¡û
Identical group No.504486 (2 seq.)
>PHG181001784
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
55152
55227
+
Phe
GAA
[ENA]
¡û
>PHG181007586
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
55200
55275
+
Phe
GAA
[ENA]
¡û
Identical group No.509338 (1 seq.)
>PHG0100428
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
59891
59965
+
Phe
GAA
[ENA]
¡û
Identical group No.523528 (1 seq.)
>PHG181006934
MG593802
Siphoviridae
Streptomyces phage Omar (MG593802)
1219
1292
+
Phe
GAA
[ENA]
¡û
Identical group No.525406 (2 seq.)
>PHG14101882
JX182370
Siphoviridae
Streptomyces phage R4 (JX182370)
1094
1167
+
Phe
GAA
[ENA]
¡û
>PHG14101909
JX262376
Siphoviridae
Streptomyces phage phiELB20 S-CAM20 (JX262376)
1083
1156
+
Phe
GAA
[ENA]
¡û
Identical group No.536311 (2 seq.)
>PHG181000798
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
59841
59914
+
Phe
GAA
[ENA]
¡û
>PHG181003965
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
59516
59590
+
Phe
GAA
[ENA]
¡û
Identical group No.602866 (1 seq.)
>PHG14102328
KC821618
Siphoviridae
Cellulophaga phage phi10:1 (KC821618)
31767
31840
+
Phe
GAA
[ENA]
¡û
Identical group No.611179 (3 seq.)
>PHG181000863
KP280063
Siphoviridae
Vibrio phage phi 3 (KP280063)
38648
38573
-
Phe
GAA
[ENA]
¡û
>PHG181004407
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
14505
14430
-
Phe
GAA
[ENA]
¡û
>PHG181004424
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
19490
19565
+
Phe
GAA
[ENA]
¡û
Identical group No.611214 (1 seq.)
>PHG181007873
MH183162
Siphoviridae
Microbacterium phage Hendrix (MH183162)
93065
93138
+
Phe
GAA
[ENA]
¡û
Identical group No.612253 (1 seq.)
>PHG14101489
JQ340389
Siphoviridae
Vibrio phage pVp-1 STSV2 (JQ340389)
42188
42263
+
Phe
GAA
[ENA]
¡û
Identical group No.619432 (2 seq.)
>PHG181007035
MG649966
Siphoviridae
Vibrio phage Ceto (MG649966)
77663
77738
+
Phe
GAA
[ENA]
¡û
>PHG181007050
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
79347
79422
+
Phe
GAA
[ENA]
¡û
Identical group No.653923 (4 seq.)
>PHG181005331
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
93420
93492
+
Phe
GAA
[ENA]
¡û
>PHG181005365
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
95723
95795
+
Phe
GAA
[ENA]
¡û
>PHG181005483
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
95178
95250
+
Phe
GAA
[ENA]
¡û
>PHG14103305
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
95699
95771
+
Phe
GAA
[ENA]
¡û
Identical group No.669934 (4 seq.)
>WENV170560404
CYGL01001329
[CYGL] human gut metagenome;
5336
5262
-
Phe
GAA
[ENA]
¢þ
>PHG181004315
KY677846
Siphoviridae
Escherichia phage phiLLS (KY677846)
49413
49487
+
Phe
GAA
[ENA]
¡û
>PHG181004658
LN887948
Siphoviridae
Escherichia phage slur09 (LN887948)
99141
99215
+
Phe
GAA
[ENA]
¡û
>PHG181007761
MH102285
Siphoviridae
Salmonella phage vB_SenS_PHB06 (MH102285)
68464
68538
+
Phe
GAA
[ENA]
¡û
Identical group No.669957 (21 seq.)
>WENV180366716
OBOD01097573
[OBOD] marine metagenome; ENVO:00002010
240
166
-
Phe
GAA
[ENA]
¢þ
>WENV183355970
OLXE01000031
[OLXE] human gut metagenome; feces
60610
60684
+
Phe
GAA
[ENA]
¢þ
>WENV183468320
OMEF01008164
[OMEF] human gut metagenome; feces
299
225
-
Phe
GAA
[ENA]
¢þ
>WENV170559960
CYGL01000004
[CYGL] human gut metagenome;
25169
25095
-
Phe
GAA
[ENA]
¢þ
>PHG0200013
AJ604531
Siphoviridae
Salmonella phage 5 K-12 (AJ604531)
7682
7608
-
Phe
GAA
[ENA]
¡û
>PHG181003791
KY114934
Siphoviridae
Salmonella phage SP01 (KY114934)
84200
84274
+
Phe
GAA
[ENA]
¡û
>PHG181004337
KY775452
Siphoviridae
Salmonella phage Stp1 (KY775452)
18714
18788
+
Phe
GAA
[ENA]
¡û
>PHG181004453
KY963424
Siphoviridae
Shigella phage SSP1 (KY963424)
107075
107149
+
Phe
GAA
[ENA]
¡û
>PHG181005629
MF431730
Siphoviridae
Bacteriophage T5-like chee24 (MF431730)
35578
35504
-
Phe
GAA
[ENA]
¡û
>PHG181005648
MF431731
Siphoviridae
Bacteriophage T5-like pork27 (MF431731)
35577
35503
-
Phe
GAA
[ENA]
¡û
>PHG181005667
MF431732
Siphoviridae
Bacteriophage T5-like pork29 (MF431732)
35578
35504
-
Phe
GAA
[ENA]
¡û
>PHG181005686
MF431733
Siphoviridae
Bacteriophage T5-like saus47N (MF431733)
35578
35504
-
Phe
GAA
[ENA]
¡û
>PHG181005705
MF431734
Siphoviridae
Bacteriophage T5-like saus111K (MF431734)
35578
35504
-
Phe
GAA
[ENA]
¡û
>PHG181005724
MF431735
Siphoviridae
Bacteriophage T5-like poul124 (MF431735)
35587
35513
-
Phe
GAA
[ENA]
¡û
>PHG181007509
MG969412
Siphoviridae
Salmonella phage GE_vB_N5 (MG969412)
82740
82812
+
Phe
GAA
[ENA]
¡û
>PHG181007517
MG969413
Siphoviridae
Salmonella phage GE_vB_N8 (MG969413)
48755
48681
-
Phe
GAA
[ENA]
¡û
>PHG181008059
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
71518
71592
+
Phe
GAA
[ENA]
¡û
>PHG181008135
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
72290
72364
+
Phe
GAA
[ENA]
¡û
>PHG181008156
MH370377
Siphoviridae
Salmonella phage S130 (MH370377)
71738
71812
+
Phe
GAA
[ENA]
¡û
>PHG181008175
MH370378
Siphoviridae
Salmonella phage S131 (MH370378)
71738
71812
+
Phe
GAA
[ENA]
¡û
>PHG181008215
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
71518
71592
+
Phe
GAA
[ENA]
¡û
Identical group No.684255 (4 seq.)
>PHG181004996
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
93744
93816
+
Phe
GAA
[ENA]
¡û
>PHG181005401
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
95150
95222
+
Phe
GAA
[ENA]
¡û
>PHG181005436
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
96534
96606
+
Phe
GAA
[ENA]
¡û
>PHG181005519
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
95508
95580
+
Phe
GAA
[ENA]
¡û
Identical group No.703743 (1 seq.)
>PHG181007815
MH153812
Siphoviridae
Rhodococcus phage Grayson (MH153812)
80131
80203
+
Phe
GAA
[ENA]
¡û
Identical group No.706532 (1 seq.)
>PHG0500036
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
37005
36931
-
Phe
GAA
[ENA]
¡û
Identical group No.711672 (13 seq.)
>PHG0200010
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
7956
7882
-
Phe
GAA
[ENA]
¡û
>PHG0200027
AY543070
Siphoviridae
Escherichia virus T5 NCTC11261 (AY543070)
35170
35096
-
Phe
GAA
[ENA]
¡û
>PHG0200030
AY587007
Siphoviridae
Escherichia virus T5 ATCC 11303-B5 (AY587007)
35091
35017
-
Phe
GAA
[ENA]
¡û
>PHG0200033
AY734508
Siphoviridae
Escherichia virus T5 HER28 (AY734508)
1490
1416
-
Phe
GAA
[ENA]
¡û
>PHG181005578
MF402939
Siphoviridae
Escherichia phage OSYSP (MF402939)
8157
8083
-
Phe
GAA
[ENA]
¡û
>PHG181005743
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181005766
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181005789
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181005812
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181005835
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181005858
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
36424
36350
-
Phe
GAA
[ENA]
¡û
>PHG181008116
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
74498
74572
+
Phe
GAA
[ENA]
¡û
>PHG181008242
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
72578
72652
+
Phe
GAA
[ENA]
¡û
Identical group No.711684 (1 seq.)
>PHG181007805
MH153807
Siphoviridae
Rhodococcus phage Peregrin (MH153807)
80662
80734
+
Phe
GAA
[ENA]
¡û
Identical group No.725982 (1 seq.)
>PHG181003939
KY363465
Siphoviridae
Providencia phage vB_PreS_PR1 (KY363465)
36770
36696
-
Phe
GAA
[ENA]
¡û
Identical group No.726561 (4 seq.)
>PHG181008488
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
86479
86551
+
Phe
GAA
[ENA]
¡û
>PHG181008523
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
88346
88418
+
Phe
GAA
[ENA]
¡û
>PHG181008637
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
87878
87950
+
Phe
GAA
[ENA]
¡û
>W1810079358
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
3846
3918
+
Phe
GAA
[ENA]
¡û
Identical group No.731975 (2 seq.)
>PHG181008369
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
70827
70899
+
Phe
GAA
[ENA]
¡û
>PHG181008405
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
73550
73622
+
Phe
GAA
[ENA]
¡û
Identical group No.731981 (1 seq.)
>PHG181008604
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
75699
75771
+
Phe
GAA
[ENA]
¡û
Identical group No.731986 (1 seq.)
>PHG181008672
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
86743
86815
+
Phe
GAA
[ENA]
¡û
Identical group No.738433 (1 seq.)
>PHG183001045
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
47885
47811
-
Phe
GAA
[ENA]
¡û
Identical group No.750776 (2 seq.)
>PHG181003809
KY223999
Siphoviridae
Mycobacterium phage MrMagoo (KY223999)
59819
59891
+
Phe
GAA
[ENA]
¡û
>PHG181004351
KY783914
Siphoviridae
Mycobacterium phage GardenSalsa (KY783914)
59818
59890
+
Phe
GAA
[ENA]
¡û
Identical group No.750787 (1 seq.)
>PHG181006021
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
101138
101210
+
Phe
GAA
[ENA]
¡û
Identical group No.751558 (1 seq.)
>PHG14102151
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
150010
149937
-
Phe
GAA
[ENA]
¡û
Identical group No.755894 (1 seq.)
>PHG181006627
MG065692
Siphoviridae
Campylobacter phage C13 (MG065692)
13372
13298
-
Phe
GAA
[ENA]
¡û
Identical group No.770394 (1 seq.)
>PHG181003576
KX774321
Siphoviridae
Rhodococcus phage Weasels2 (KX774321)
82159
82231
+
Phe
GAA
[ENA]
¡û
Identical group No.778895 (1 seq.)
>PHG181004239
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
69554
69628
+
Phe
GAA
[ENA]
¡û
Identical group No.778905 (1 seq.)
>PHG181008557
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
88414
88486
+
Phe
GAA
[ENA]
¡û
Identical group No.778908 (1 seq.)
>PHG181008571
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
98085
98157
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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