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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GAC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525404 (8 seq.)
>PHG181004113
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
51037
51112
+
Val
GAC
[ENA]
¡û
>PHG181004158
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
51756
51831
+
Val
GAC
[ENA]
¡û
>PHG181004181
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
52196
52271
+
Val
GAC
[ENA]
¡û
>PHG14101662
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
50988
51063
+
Val
GAC
[ENA]
¡û
>PHG14101704
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
51838
51913
+
Val
GAC
[ENA]
¡û
>PHG14101725
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
50430
50505
+
Val
GAC
[ENA]
¡û
>PHG14101745
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
51712
51787
+
Val
GAC
[ENA]
¡û
>PHG14101820
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
156101
156026
-
Val
GAC
[ENA]
¡û
Identical group No.684217 (2 seq.)
>PHG183000283
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
14102
14176
+
Val
GAC
[ENA]
¡û
>PHG183001529
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
14148
14222
+
Val
GAC
[ENA]
¡û
Identical group No.704805 (1 seq.)
>PHG14101682
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
68535
68609
+
Val
GAC
[ENA]
¡û
Identical group No.778890 (1 seq.)
>PHG181004229
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
67347
67421
+
Val
GAC
[ENA]
¡û
Identical group No.779632 (2 seq.)
>PHG183000920
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
105314
105385
+
Val
GAC
[ENA]
¡û
>PHG14300517
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
105876
105947
+
Val
GAC
[ENA]
¡û
Identical group No.793239 (3 seq.)
>PHG183000908
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
105328
105399
+
Val
GAC
[ENA]
¡û
>PHG183000914
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
106910
106981
+
Val
GAC
[ENA]
¡û
>PHG183000925
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
105920
105991
+
Val
GAC
[ENA]
¡û
Identical group No.808953 (1 seq.)
>PHG183000823
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
103328
103399
+
Val
GAC
[ENA]
¡û
Identical group No.812551 (2 seq.)
>PHG183001739
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
104847
104918
+
Val
GAC
[ENA]
¡û
>W1830001531
PEKU01000161
Actinomycetota
Streptomyces sp. JV178 [PEKU]
2252
2323
+
Val
GAC
[ENA]
¡û
Identical group No.814989 (1 seq.)
>PHG183001770
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
105470
105541
+
Val
GAC
[ENA]
¡û
Identical group No.814990 (2 seq.)
>PHG183000896
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
103532
103603
+
Val
GAC
[ENA]
¡û
>PHG183000903
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
105907
105978
+
Val
GAC
[ENA]
¡û
Identical group No.818050 (2 seq.)
>PHG183001744
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
108205
108276
+
Val
GAC
[ENA]
¡û
>PHG183001762
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
107706
107777
+
Val
GAC
[ENA]
¡û
Identical group No.836940 (1 seq.)
>PHG183001750
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
109125
109196
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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