This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GAG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77590 (7 seq.)
>PHG183000620
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
49963
50051
+
Leu
GAG
[ENA]
¡û
>PHG183000627
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
50438
50526
+
Leu
GAG
[ENA]
¡û
>PHG183000637
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
54971
55059
+
Leu
GAG
[ENA]
¡û
>PHG183000643
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
50555
50643
+
Leu
GAG
[ENA]
¡û
>PHG183000648
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
50995
51083
+
Leu
GAG
[ENA]
¡û
>PHG14300280
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
50511
50599
+
Leu
GAG
[ENA]
¡û
>PHG14300290
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
157302
157214
-
Leu
GAG
[ENA]
¡û
Identical group No.97201 (1 seq.)
>PHG14101678
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
62304
62391
+
Leu
GAG
[ENA]
¡û
Identical group No.97204 (4 seq.)
>PHG181004110
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
49828
49915
+
Leu
GAG
[ENA]
¡û
>PHG14101659
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
49187
49274
+
Leu
GAG
[ENA]
¡û
>PHG14101701
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
50035
50122
+
Leu
GAG
[ENA]
¡û
>PHG14101722
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
49222
49309
+
Leu
GAG
[ENA]
¡û
Identical group No.102975 (2 seq.)
>PHG181008376
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
74797
74882
+
Leu
GAG
[ENA]
¡û
>PHG181008411
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
78551
78636
+
Leu
GAG
[ENA]
¡û
Identical group No.107937 (1 seq.)
>PHG14101762
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
50739
50826
+
Leu
GAG
[ENA]
¡û
Identical group No.180104 (2 seq.)
>PHG181005487
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
104794
104876
+
Leu
GAG
[ENA]
¡û
>PHG14103308
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
105356
105438
+
Leu
GAG
[ENA]
¡û
Identical group No.189799 (2 seq.)
>PHG181005405
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
104809
104891
+
Leu
GAG
[ENA]
¡û
>PHG181005440
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
106391
106473
+
Leu
GAG
[ENA]
¡û
Identical group No.200804 (1 seq.)
>PHG181004999
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
102844
102926
+
Leu
GAG
[ENA]
¡û
Identical group No.202882 (2 seq.)
>PHG181008505
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
104316
104398
+
Leu
GAG
[ENA]
¡û
>W1810079375
PEKU01000161
Actinomycetota
Streptomyces sp. JV178 [PEKU]
1721
1803
+
Leu
GAG
[ENA]
¡û
Identical group No.204392 (2 seq.)
>PHG181005335
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
103012
103094
+
Leu
GAG
[ENA]
¡û
>PHG181005369
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
105387
105469
+
Leu
GAG
[ENA]
¡û
Identical group No.204395 (1 seq.)
>PHG181008690
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
104939
105021
+
Leu
GAG
[ENA]
¡û
Identical group No.206420 (2 seq.)
>PHG181008540
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
107536
107618
+
Leu
GAG
[ENA]
¡û
>PHG181008654
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
107036
107118
+
Leu
GAG
[ENA]
¡û
Identical group No.211461 (1 seq.)
>PHG181005523
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
105401
105483
+
Leu
GAG
[ENA]
¡û
Identical group No.217844 (1 seq.)
>PHG181008576
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
108466
108548
+
Leu
GAG
[ENA]
¡û
Identical group No.220541 (2 seq.)
>PHG181001778
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
17462
17545
+
Leu
GAG
[ENA]
¡û
>PHG181007580
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
17508
17591
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK