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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GCA
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80221 (6 seq.)
>PHG181004077
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
101454
101366
-
Cys
GCA
[ENA]
¡û
>PHG181004098
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
101929
101841
-
Cys
GCA
[ENA]
¡û
>PHG181004123
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
101815
101727
-
Cys
GCA
[ENA]
¡û
>PHG181004144
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
106462
106374
-
Cys
GCA
[ENA]
¡û
>PHG181004167
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
102101
102013
-
Cys
GCA
[ENA]
¡û
>PHG181004190
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
102541
102453
-
Cys
GCA
[ENA]
¡û
Identical group No.84527 (1 seq.)
>PHG14101769
JX100814
Siphoviridae
Caulobacter virus Rogue Lu11 (JX100814)
102260
102172
-
Cys
GCA
[ENA]
¡û
Identical group No.129502 (1 seq.)
>PHG14101688
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
132216
132302
+
Cys
GCA
[ENA]
¡û
Identical group No.388343 (2 seq.)
>PHG181004804
MF001358
Siphoviridae
Enterococcus phage EF1 (MF001358)
50644
50717
+
Cys
GCA
[ENA]
¡û
>PHG181004836
MF001361
Siphoviridae
Enterococcus phage EF5 (MF001361)
66702
66629
-
Cys
GCA
[ENA]
¡û
Identical group No.397529 (1 seq.)
>PHG181006032
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
47451
47375
-
Cys
GCA
[ENA]
¡û
Identical group No.415247 (1 seq.)
>PHG14102152
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
149930
149854
-
Cys
GCA
[ENA]
¡û
Identical group No.445189 (2 seq.)
>PHG184000018
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
9857
9781
-
Cys
GCA
[ENA]
¡û
>PHG184000020
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
24138
24214
+
Cys
GCA
[ENA]
¡û
Identical group No.480720 (30 seq.)
>WENV180364757
OBOA01107429
[OBOA] marine metagenome; Deep Chlorophyll Maximum
39
114
+
Cys
GCA
[ENA]
¢þ
>WENV180377614
OBON01060542
[OBON] marine metagenome; sea water
254
179
-
Cys
GCA
[ENA]
¢þ
>WENV183355971
OLXE01000031
[OLXE] human gut metagenome; feces
61044
61119
+
Cys
GCA
[ENA]
¢þ
>WENV170559961
CYGL01000004
[CYGL] human gut metagenome;
24734
24659
-
Cys
GCA
[ENA]
¢þ
>WENV170560280
CYGL01000398
[CYGL] human gut metagenome;
13942
13867
-
Cys
GCA
[ENA]
¢þ
>WENV170560405
CYGL01001329
[CYGL] human gut metagenome;
4522
4447
-
Cys
GCA
[ENA]
¢þ
>PHG0100089
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
7364
7289
-
Cys
GCA
[ENA]
¡û
>PHG0100295
AY543070
Siphoviridae
Escherichia virus T5 NCTC11261 (AY543070)
34621
34546
-
Cys
GCA
[ENA]
¡û
>PHG0100308
AY587007
Siphoviridae
Escherichia virus T5 ATCC 11303-B5 (AY587007)
34542
34467
-
Cys
GCA
[ENA]
¡û
>PHG0100340
AY734508
Siphoviridae
Escherichia virus T5 HER28 (AY734508)
941
866
-
Cys
GCA
[ENA]
¡û
>PHG181000844
KP143763
Siphoviridae
Salmonella phage Shivani (KP143763)
32494
32419
-
Cys
GCA
[ENA]
¡û
>PHG181002566
KX130863
Siphoviridae
Shigella phage SHSML-45 (KX130863)
57889
57814
-
Cys
GCA
[ENA]
¡û
>PHG181003792
KY114934
Siphoviridae
Salmonella phage SP01 (KY114934)
84907
84982
+
Cys
GCA
[ENA]
¡û
>PHG181004316
KY677846
Siphoviridae
Escherichia phage phiLLS (KY677846)
49847
49922
+
Cys
GCA
[ENA]
¡û
>PHG181004338
KY775452
Siphoviridae
Salmonella phage Stp1 (KY775452)
19147
19222
+
Cys
GCA
[ENA]
¡û
>PHG181004454
KY963424
Siphoviridae
Shigella phage SSP1 (KY963424)
107889
107964
+
Cys
GCA
[ENA]
¡û
>PHG181004659
LN887948
Siphoviridae
Escherichia phage slur09 (LN887948)
99955
100030
+
Cys
GCA
[ENA]
¡û
>PHG181005579
MF402939
Siphoviridae
Escherichia phage OSYSP (MF402939)
7345
7270
-
Cys
GCA
[ENA]
¡û
>PHG181005630
MF431730
Siphoviridae
Bacteriophage T5-like chee24 (MF431730)
34764
34689
-
Cys
GCA
[ENA]
¡û
>PHG181005649
MF431731
Siphoviridae
Bacteriophage T5-like pork27 (MF431731)
34763
34688
-
Cys
GCA
[ENA]
¡û
>PHG181005668
MF431732
Siphoviridae
Bacteriophage T5-like pork29 (MF431732)
34764
34689
-
Cys
GCA
[ENA]
¡û
>PHG181005687
MF431733
Siphoviridae
Bacteriophage T5-like saus47N (MF431733)
34764
34689
-
Cys
GCA
[ENA]
¡û
>PHG181005706
MF431734
Siphoviridae
Bacteriophage T5-like saus111K (MF431734)
34764
34689
-
Cys
GCA
[ENA]
¡û
>PHG181005725
MF431735
Siphoviridae
Bacteriophage T5-like poul124 (MF431735)
34773
34698
-
Cys
GCA
[ENA]
¡û
>PHG181006053
MF774688
Siphoviridae
Salmonella phage SP1a (MF774688)
19043
19118
+
Cys
GCA
[ENA]
¡û
>PHG181006628
MG065692
Siphoviridae
Campylobacter phage C13 (MG065692)
12665
12590
-
Cys
GCA
[ENA]
¡û
>PHG181007762
MH102285
Siphoviridae
Salmonella phage vB_SenS_PHB06 (MH102285)
68898
68973
+
Cys
GCA
[ENA]
¡û
>PHG181008157
MH370377
Siphoviridae
Salmonella phage S130 (MH370377)
72171
72246
+
Cys
GCA
[ENA]
¡û
>PHG181008176
MH370378
Siphoviridae
Salmonella phage S131 (MH370378)
72171
72246
+
Cys
GCA
[ENA]
¡û
>PHG14100667
HQ406778
Siphoviridae
Salmonella virus SPC35 VE87 (HQ406778)
33310
33235
-
Cys
GCA
[ENA]
¡û
Identical group No.504386 (1 seq.)
>PHG183001372
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
70871
70946
+
Cys
GCA
[ENA]
¡û
Identical group No.509336 (3 seq.)
>PHG0300083
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
61882
61957
+
Cys
GCA
[ENA]
¡û
>PHG183000061
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
61941
62016
+
Cys
GCA
[ENA]
¡û
>PHG183000610
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
61546
61621
+
Cys
GCA
[ENA]
¡û
Identical group No.523502 (2 seq.)
>PHG181001402
KT151955
Siphoviridae
Brevibacillus phage Jenst (KT151955)
7618
7546
-
Cys
GCA
[ENA]
¡û
>PHG181001408
KT151957
Siphoviridae
Brevibacillus phage SecTim467 (KT151957)
7618
7546
-
Cys
GCA
[ENA]
¡û
Identical group No.536326 (14 seq.)
>PHG0100364
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
36191
36116
-
Cys
GCA
[ENA]
¡û
>PHG181002406
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
36254
36179
-
Cys
GCA
[ENA]
¡û
>PHG181002497
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
35365
35290
-
Cys
GCA
[ENA]
¡û
>PHG181004367
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
35372
35297
-
Cys
GCA
[ENA]
¡û
>PHG181004845
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
86109
86184
+
Cys
GCA
[ENA]
¡û
>PHG181006449
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
8900
8975
+
Cys
GCA
[ENA]
¡û
>PHG181008037
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
73678
73753
+
Cys
GCA
[ENA]
¡û
>PHG181008060
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
72332
72407
+
Cys
GCA
[ENA]
¡û
>PHG181008086
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
72268
72343
+
Cys
GCA
[ENA]
¡û
>PHG181008136
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
73105
73180
+
Cys
GCA
[ENA]
¡û
>PHG181008194
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
77951
78026
+
Cys
GCA
[ENA]
¡û
>PHG181008216
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
72332
72407
+
Cys
GCA
[ENA]
¡û
>PHG181008243
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
73183
73258
+
Cys
GCA
[ENA]
¡û
>PHG14103103
KM236244
Siphoviridae
Salmonella virus Stitch LIKBL0011 (KM236244)
34736
34661
-
Cys
GCA
[ENA]
¡û
Identical group No.537849 (1 seq.)
>PHG14101925
JX316028
Siphoviridae
Erwinia phage phiEaH2 S-CAM20 (JX316028)
167459
167534
+
Cys
GCA
[ENA]
¡û
Identical group No.581839 (1 seq.)
>PHG183001365
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
68033
68108
+
Cys
GCA
[ENA]
¡û
Identical group No.585171 (1 seq.)
>PHG14300360
KC688701
Siphoviridae
Croceibacter phage P2559Y Gb1 (KC688701)
26696
26783
+
Cys
GCA
[ENA]
¡û
Identical group No.601811 (1 seq.)
>PHG181001389
KT070867
Siphoviridae
Bacillus phage PBC2 (KT070867)
150458
150383
-
Cys
GCA
[ENA]
¡û
Identical group No.612260 (2 seq.)
>PHG0100104
AJ604531
Siphoviridae
Salmonella phage 5 K-12 (AJ604531)
7248
7173
-
Cys
GCA
[ENA]
¡û
>PHG14102791
KJ190157
Siphoviridae
Escherichia phage vB_EcoS_FFH1 TahiMoana (KJ190157)
33659
33584
-
Cys
GCA
[ENA]
¡û
Identical group No.669917 (6 seq.)
>PHG181001721
KT591489
Siphoviridae
Mycobacterium phage Archie (KT591489)
65423
65497
+
Cys
GCA
[ENA]
¡û
>PHG181003437
KX580961
Siphoviridae
Mycobacterium phage Zakai (KX580961)
65948
66021
+
Cys
GCA
[ENA]
¡û
>PHG181005138
MF185730
Siphoviridae
Mycobacterium phage Miley16 (MF185730)
66237
66310
+
Cys
GCA
[ENA]
¡û
>PHG14100955
JF744988
Siphoviridae
Mycobacterium virus Faith1 (JF744988)
65545
65618
+
Cys
GCA
[ENA]
¡û
>PHG14102182
KC661276
Siphoviridae
Mycobacterium phage Winky Gb1 (KC661276)
66238
66311
+
Cys
GCA
[ENA]
¡û
>PHG14102202
KC691254
Siphoviridae
Mycobacterium phage Breezona Gb1 (KC691254)
66237
66310
+
Cys
GCA
[ENA]
¡û
Identical group No.669958 (1 seq.)
>PHG181007518
MG969413
Siphoviridae
Salmonella phage GE_vB_N8 (MG969413)
48324
48250
-
Cys
GCA
[ENA]
¡û
Identical group No.684246 (1 seq.)
>PHG181005175
MF319184
Siphoviridae
Mycobacterium phage GenevaB15 (MF319184)
60555
60627
+
Cys
GCA
[ENA]
¡û
Identical group No.695882 (4 seq.)
>PHG181004008
KY554762
Siphoviridae
Lactococcus phage LW31 (KY554762)
60452
60381
-
Cys
GCA
[ENA]
¡û
>PHG181004011
KY554763
Siphoviridae
Lactococcus phage LW32 (KY554763)
60062
59991
-
Cys
GCA
[ENA]
¡û
>PHG181004014
KY554764
Siphoviridae
Lactococcus phage LW33 (KY554764)
59799
59728
-
Cys
GCA
[ENA]
¡û
>PHG181004017
KY554765
Siphoviridae
Lactococcus phage LW4 (KY554765)
60118
60047
-
Cys
GCA
[ENA]
¡û
Identical group No.711673 (6 seq.)
>PHG181005744
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
35734
35660
-
Cys
GCA
[ENA]
¡û
>PHG181005767
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
35734
35660
-
Cys
GCA
[ENA]
¡û
>PHG181005790
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
35734
35660
-
Cys
GCA
[ENA]
¡û
>PHG181005813
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
35734
35660
-
Cys
GCA
[ENA]
¡û
>PHG181005836
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
35734
35660
-
Cys
GCA
[ENA]
¡û
>PHG181005859
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
35734
35660
-
Cys
GCA
[ENA]
¡û
Identical group No.712880 (1 seq.)
>PHG14100411
HE956708
Siphoviridae
Yersinia phage phiR201 TP-J34 (HE956708)
34590
34516
-
Cys
GCA
[ENA]
¡û
Identical group No.731952 (2 seq.)
>PHG181004020
KY554766
Siphoviridae
Lactococcus phage AM6 (KY554766)
61955
61883
-
Cys
GCA
[ENA]
¡û
>PHG181004024
KY554767
Siphoviridae
Lactococcus phage AM7 (KY554767)
62153
62081
-
Cys
GCA
[ENA]
¡û
Identical group No.739262 (1 seq.)
>PHG14100774
HQ665011
Siphoviridae
Escherichia virus AKFV33 EcoS-CEV2 (HQ665011)
33456
33382
-
Cys
GCA
[ENA]
¡û
Identical group No.739266 (1 seq.)
>PHG14100976
JF937105
Siphoviridae
Mycobacterium phage Rey (JF937105)
60672
60744
+
Cys
GCA
[ENA]
¡û
Identical group No.750777 (2 seq.)
>PHG181003812
KY223999
Siphoviridae
Mycobacterium phage MrMagoo (KY223999)
60749
60821
+
Cys
GCA
[ENA]
¡û
>PHG181004354
KY783914
Siphoviridae
Mycobacterium phage GardenSalsa (KY783914)
60748
60820
+
Cys
GCA
[ENA]
¡û
Identical group No.750796 (1 seq.)
>PHG181008117
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
75321
75395
+
Cys
GCA
[ENA]
¡û
Identical group No.751546 (1 seq.)
>PHG14100094
FJ429185
Siphoviridae
Lactococcus phage P087 wBol1b (FJ429185)
59975
59903
-
Cys
GCA
[ENA]
¡û
Identical group No.755906 (1 seq.)
>PHG181007510
MG969412
Siphoviridae
Salmonella phage GE_vB_N5 (MG969412)
83174
83248
+
Cys
GCA
[ENA]
¡û
Identical group No.786854 (1 seq.)
>PHG183000552
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
33241
33168
-
Cys
GCA
[ENA]
¡û
Identical group No.787918 (5 seq.)
>PHG181005116
MF185726
Siphoviridae
Mycobacterium phage Appletree2 (MF185726)
63311
63384
+
Cys
GCA
[ENA]
¡û
>PHG14100517
HM152763
Siphoviridae
Mycobacterium virus Bron AO7543 (HM152763)
62874
62947
+
Cys
GCA
[ENA]
¡û
>PHG14100912
JF704108
Siphoviridae
Mycobacterium virus Joedirt Phipps (JF704108)
64210
64283
+
Cys
GCA
[ENA]
¡û
>PHG14100922
JF704113
Siphoviridae
Mycobacterium phage UPIE Oosterbaan (JF704113)
63215
63288
+
Cys
GCA
[ENA]
¡û
>PHG14101182
JN600672
Siphoviridae
Mycobacterium phage Fezzik vB_EcoM_CBA120 (JN600672)
63704
63777
+
Cys
GCA
[ENA]
¡û
Identical group No.793259 (2 seq.)
>PHG181001771
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
15385
15458
+
Cys
GCA
[ENA]
¡û
>PHG181007573
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
15431
15504
+
Cys
GCA
[ENA]
¡û
Identical group No.793263 (1 seq.)
>PHG181007924
MH271303
Siphoviridae
Microbacterium phage MementoMori (MH271303)
5888
5961
+
Cys
GCA
[ENA]
¡û
Identical group No.805594 (5 seq.)
>PHG183000355
KU234099
Siphoviridae
Mycobacterium phage MkaliMitinis3 (KU234099)
66074
66146
+
Cys
GCA
[ENA]
¡û
>PHG183000413
KU997639
Siphoviridae
Mycobacterium phage Loadrie (KU997639)
66388
66460
+
Cys
GCA
[ENA]
¡û
>PHG183000488
KX507361
Siphoviridae
Mycobacterium phage Gardann (KX507361)
65561
65633
+
Cys
GCA
[ENA]
¡û
>PHG183000816
MF140422
Siphoviridae
Mycobacterium phage Nicholasp3 (MF140422)
65561
65633
+
Cys
GCA
[ENA]
¡û
>PHG183000872
MF324910
Siphoviridae
Mycobacterium phage GuuelaD (MF324910)
65683
65754
+
Cys
GCA
[ENA]
¡û
Identical group No.815005 (1 seq.)
>PHG181008407
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
74341
74412
+
Cys
GCA
[ENA]
¡û
Identical group No.815011 (1 seq.)
>PHG181008606
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
76626
76698
+
Cys
GCA
[ENA]
¡û
Identical group No.820889 (1 seq.)
>PHG14101613
JX006077
Siphoviridae
Saccharomonospora phage PIS 136 Lu11 (JX006077)
65389
65316
-
Cys
GCA
[ENA]
¡û
Identical group No.823676 (2 seq.)
>PHG183000494
KX580962
Siphoviridae
Mycobacterium phage Wilder (KX580962)
65700
65772
+
Cys
GCA
[ENA]
¡û
>PHG183000852
MF185728
Siphoviridae
Mycobacterium phage Finemlucis (MF185728)
66615
66686
+
Cys
GCA
[ENA]
¡û
Identical group No.823692 (1 seq.)
>PHG181006017
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
97947
98018
+
Cys
GCA
[ENA]
¡û
Identical group No.828069 (1 seq.)
>PHG181008372
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
71538
71610
+
Cys
GCA
[ENA]
¡û
Identical group No.836943 (1 seq.)
>PHG181004243
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
70954
71027
+
Cys
GCA
[ENA]
¡û
Identical group No.836946 (1 seq.)
>PHG181007226
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
74320
74391
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
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Direction
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Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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