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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23372 (1 seq.)
>PHG181006417
MG030347
Siphoviridae
Proteus phage PM135 (MG030347)
69902
69993
+
Ser
GGA
[ENA]
¡û
Identical group No.45094 (2 seq.)
>PHG181004401
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
17024
16934
-
Ser
GGA
[ENA]
¡û
>PHG181004418
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
16971
17061
+
Ser
GGA
[ENA]
¡û
Identical group No.48249 (2 seq.)
>WENV181844953
OGVW01055592
[OGVW] freshwater metagenome; freshwater
516
427
-
Ser
GGA
[ENA]
¢þ
>PHG181007170
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
63752
63841
+
Ser
GGA
[ENA]
¡û
Identical group No.95564 (10 seq.)
>PHG181004069
KY555142
Siphoviridae
Caulobacter phage Ccr10 (KY555142)
50302
50389
+
Ser
GGA
[ENA]
¡û
>PHG181004090
KY555143
Siphoviridae
Caulobacter phage Ccr2 (KY555143)
50777
50864
+
Ser
GGA
[ENA]
¡û
>PHG181004136
KY555145
Siphoviridae
Caulobacter phage Ccr29 (KY555145)
55310
55397
+
Ser
GGA
[ENA]
¡û
>PHG181004157
KY555146
Siphoviridae
Caulobacter phage Ccr32 (KY555146)
50894
50981
+
Ser
GGA
[ENA]
¡û
>PHG181004180
KY555147
Siphoviridae
Caulobacter phage Ccr34 (KY555147)
51334
51421
+
Ser
GGA
[ENA]
¡û
>PHG14101661
JX100809
Siphoviridae
Caulobacter virus Swift Lu11 (JX100809)
49532
49619
+
Ser
GGA
[ENA]
¡û
>PHG14101703
JX100811
Siphoviridae
Caulobacter virus Karma Lu11 (JX100811)
50380
50467
+
Ser
GGA
[ENA]
¡û
>PHG14101724
JX100812
Siphoviridae
Caulobacter virus Magneto Lu11 (JX100812)
49567
49654
+
Ser
GGA
[ENA]
¡û
>PHG14101744
JX100813
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX100813)
50850
50937
+
Ser
GGA
[ENA]
¡û
>PHG14101819
JX163858
Siphoviridae
Caulobacter virus phiCbK Lu11 (JX163858)
156963
156876
-
Ser
GGA
[ENA]
¡û
Identical group No.112134 (1 seq.)
>PHG181004112
KY555144
Siphoviridae
Caulobacter phage Ccr5 (KY555144)
50173
50260
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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