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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504452 (3 seq.)
>PHG181005403
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
96097
96170
+
Thr
GGT
[ENA]
¡û
>PHG181005438
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
97481
97554
+
Thr
GGT
[ENA]
¡û
>PHG181005521
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
97147
97220
+
Thr
GGT
[ENA]
¡û
Identical group No.561450 (2 seq.)
>PHG181004998
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
94665
94738
+
Thr
GGT
[ENA]
¡û
>PHG181008623
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
4222
4149
-
Thr
GGT
[ENA]
¡û
Identical group No.581899 (2 seq.)
>PHG181008389
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
4218
4145
-
Thr
GGT
[ENA]
¡û
>PHG181008424
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
4882
4809
-
Thr
GGT
[ENA]
¡û
Identical group No.684273 (1 seq.)
>PHG181007167
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
63086
63160
+
Thr
GGT
[ENA]
¡û
Identical group No.684281 (2 seq.)
>PHG181001781
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
18147
18221
+
Thr
GGT
[ENA]
¡û
>PHG181007583
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
18193
18267
+
Thr
GGT
[ENA]
¡û
Identical group No.726564 (6 seq.)
>PHG181005333
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
94345
94417
+
Thr
GGT
[ENA]
¡û
>PHG181005367
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
97158
97230
+
Thr
GGT
[ENA]
¡û
>PHG181005485
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
96100
96172
+
Thr
GGT
[ENA]
¡û
>PHG181008503
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
95666
95738
+
Thr
GGT
[ENA]
¡û
>PHG181008688
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
96298
96370
+
Thr
GGT
[ENA]
¡û
>W1810079373
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
13033
13105
+
Thr
GGT
[ENA]
¡û
Identical group No.738455 (3 seq.)
>PHG181008539
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
98107
98179
+
Thr
GGT
[ENA]
¡û
>PHG181008573
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
99051
99123
+
Thr
GGT
[ENA]
¡û
>PHG181008652
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
97059
97131
+
Thr
GGT
[ENA]
¡û
Identical group No.778900 (1 seq.)
>PHG181007238
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
4890
4818
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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