This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = GTG
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.77472 (2 seq.)
>PHG181001400
KT151955
Siphoviridae
Brevibacillus phage Jenst (KT151955)
8574
8486
-
His
GTG
[ENA]
¡û
>PHG181001406
KT151957
Siphoviridae
Brevibacillus phage SecTim467 (KT151957)
8574
8486
-
His
GTG
[ENA]
¡û
Identical group No.240670 (4 seq.)
>PHG181004995
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
93487
93562
+
His
GTG
[ENA]
¡û
>PHG181005330
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
93163
93238
+
His
GTG
[ENA]
¡û
>PHG181005364
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
95466
95541
+
His
GTG
[ENA]
¡û
>PHG14103304
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
95553
95628
+
His
GTG
[ENA]
¡û
Identical group No.250394 (1 seq.)
>PHG181006369
MF979564
Siphoviridae
Pectobacterium phage DU_PP_V (MF979564)
28407
28330
-
His
GTG
[ENA]
¡û
Identical group No.257789 (1 seq.)
>PHG181003940
KY363465
Siphoviridae
Providencia phage vB_PreS_PR1 (KY363465)
36555
36478
-
His
GTG
[ENA]
¡û
Identical group No.297295 (47 seq.)
>PHG0500005
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
3018
2942
-
His
GTG
[ENA]
¡û
>PHG0500006
AJ604531
Siphoviridae
Salmonella phage 5 K-12 (AJ604531)
2978
2902
-
His
GTG
[ENA]
¡û
>PHG0500025
AY543070
Siphoviridae
Escherichia virus T5 NCTC11261 (AY543070)
30282
30206
-
His
GTG
[ENA]
¡û
>PHG0500030
AY587007
Siphoviridae
Escherichia virus T5 ATCC 11303-B5 (AY587007)
30203
30127
-
His
GTG
[ENA]
¡û
>PHG0500033
AY692264
Siphoviridae
Escherichia virus T5 st0 deletion mutant (AY692264)
30285
30209
-
His
GTG
[ENA]
¡û
>PHG0500035
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
31641
31565
-
His
GTG
[ENA]
¡û
>PHG183000047
KM979354
Siphoviridae
Escherichia phage DT57C (KM979354)
26406
26330
-
His
GTG
[ENA]
¡û
>PHG183000053
KM979355
Siphoviridae
Enterobacteria phage DT571/2 (KM979355)
25714
25638
-
His
GTG
[ENA]
¡û
>PHG183000178
KR422353
Siphoviridae
Escherichia phage APCEc03 (KR422353)
2260
2336
+
His
GTG
[ENA]
¡û
>PHG183000405
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
31256
31180
-
His
GTG
[ENA]
¡û
>PHG183000429
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
30366
30290
-
His
GTG
[ENA]
¡û
>PHG183000579
KY114934
Siphoviridae
Salmonella phage SP01 (KY114934)
88288
88364
+
His
GTG
[ENA]
¡û
>PHG183000702
KY677846
Siphoviridae
Escherichia phage phiLLS (KY677846)
53708
53784
+
His
GTG
[ENA]
¡û
>PHG183000708
KY775453
Siphoviridae
Salmonella phage Stp1 (KY775453)
1934
2010
+
His
GTG
[ENA]
¡û
>PHG183000717
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
30723
30647
-
His
GTG
[ENA]
¡û
>PHG183000741
KY963424
Siphoviridae
Shigella phage SSP1 (KY963424)
111729
111805
+
His
GTG
[ENA]
¡û
>PHG183000766
LN887948
Siphoviridae
Escherichia phage slur09 (LN887948)
103672
103748
+
His
GTG
[ENA]
¡û
>PHG183000793
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
90343
90419
+
His
GTG
[ENA]
¡û
>PHG183000946
MF402939
Siphoviridae
Escherichia phage OSYSP (MF402939)
2453
2377
-
His
GTG
[ENA]
¡û
>PHG183000959
MF431730
Siphoviridae
Bacteriophage T5-like chee24 (MF431730)
29889
29813
-
His
GTG
[ENA]
¡û
>PHG183000965
MF431731
Siphoviridae
Bacteriophage T5-like pork27 (MF431731)
29888
29812
-
His
GTG
[ENA]
¡û
>PHG183000971
MF431732
Siphoviridae
Bacteriophage T5-like pork29 (MF431732)
29889
29813
-
His
GTG
[ENA]
¡û
>PHG183000977
MF431733
Siphoviridae
Bacteriophage T5-like saus47N (MF431733)
29889
29813
-
His
GTG
[ENA]
¡û
>PHG183000983
MF431734
Siphoviridae
Bacteriophage T5-like saus111K (MF431734)
29889
29813
-
His
GTG
[ENA]
¡û
>PHG183000989
MF431735
Siphoviridae
Bacteriophage T5-like poul124 (MF431735)
29898
29822
-
His
GTG
[ENA]
¡û
>PHG183000994
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183000999
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183001004
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183001009
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183001014
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183001019
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
30683
30607
-
His
GTG
[ENA]
¡û
>PHG183001047
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
42267
42191
-
His
GTG
[ENA]
¡û
>PHG183001052
MF774688
Siphoviridae
Salmonella phage SP1a (MF774688)
21858
21934
+
His
GTG
[ENA]
¡û
>PHG183001163
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
13268
13344
+
His
GTG
[ENA]
¡û
>PHG183001220
MG387042
Siphoviridae
Salmonella phage SP3 (MG387042)
27714
27638
-
His
GTG
[ENA]
¡û
>PHG183001513
MG969412
Siphoviridae
Salmonella phage GE_vB_N5 (MG969412)
86732
86808
+
His
GTG
[ENA]
¡û
>PHG183001573
MH102285
Siphoviridae
Salmonella phage vB_SenS_PHB06 (MH102285)
72617
72693
+
His
GTG
[ENA]
¡û
>PHG183001598
MH203051
Siphoviridae
Escherichia phage Gostya9 (MH203051)
26788
26712
-
His
GTG
[ENA]
¡û
>PHG183001644
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
78112
78188
+
His
GTG
[ENA]
¡û
>PHG183001651
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
76814
76890
+
His
GTG
[ENA]
¡û
>PHG183001656
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
76769
76845
+
His
GTG
[ENA]
¡û
>PHG183001665
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
79863
79939
+
His
GTG
[ENA]
¡û
>PHG183001671
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
77786
77862
+
His
GTG
[ENA]
¡û
>PHG183001675
MH370377
Siphoviridae
Salmonella phage S130 (MH370377)
76662
76738
+
His
GTG
[ENA]
¡û
>PHG183001679
MH370378
Siphoviridae
Salmonella phage S131 (MH370378)
76662
76738
+
His
GTG
[ENA]
¡û
>PHG183001685
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
82764
82840
+
His
GTG
[ENA]
¡û
>PHG183001692
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
76814
76890
+
His
GTG
[ENA]
¡û
Identical group No.297327 (4 seq.)
>WENV182395142
OIEK01001115
[OIEK] human gut metagenome; human gut
1059
983
-
His
GTG
[ENA]
¢þ
>WENV182951487
OKVU01000787
[OKVU] human gut metagenome; human gut
1228
1304
+
His
GTG
[ENA]
¢þ
>WENV182953269
OKVY01000028
[OKVY] human gut metagenome; human gut
26336
26260
-
His
GTG
[ENA]
¢þ
>PHG181003649
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
36530
36454
-
His
GTG
[ENA]
¡û
Identical group No.318889 (2 seq.)
>PHG183001364
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
62654
62730
+
His
GTG
[ENA]
¡û
>PHG183001368
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
60550
60626
+
His
GTG
[ENA]
¡û
Identical group No.318954 (2 seq.)
>WENV170657872
JTFP01027582
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
721
797
+
His
GTG
[ENA]
¢þ
>PHG181006789
MG459987
Siphoviridae
Klebsiella phage Sugarland (MG459987)
38410
38334
-
His
GTG
[ENA]
¡û
Identical group No.335783 (1 seq.)
>PHG181006425
MG030347
Siphoviridae
Proteus phage PM135 (MG030347)
75763
75839
+
His
GTG
[ENA]
¡û
Identical group No.348973 (3 seq.)
>PHG181003236
KX397364
Myoviridae
Erwinia phage vB_EamM_Asesino (KX397364)
4199
4275
+
His
GTG
[ENA]
¡û
>PHG181003299
KX397373
Myoviridae
Erwinia phage vB_EamM_Stratton (KX397373)
4119
4195
+
His
GTG
[ENA]
¡û
>PHG14101932
JX316028
Siphoviridae
Erwinia phage phiEaH2 S-CAM20 (JX316028)
169980
170056
+
His
GTG
[ENA]
¡û
Identical group No.388356 (1 seq.)
>PHG181008605
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
76550
76625
+
His
GTG
[ENA]
¡û
Identical group No.415245 (1 seq.)
>PHG14101492
JQ340389
Siphoviridae
Vibrio phage pVp-1 STSV2 (JQ340389)
44928
45004
+
His
GTG
[ENA]
¡û
Identical group No.421665 (1 seq.)
>PHG183001190
MG065692
Siphoviridae
Campylobacter phage C13 (MG065692)
9508
9432
-
His
GTG
[ENA]
¡û
Identical group No.421690 (1 seq.)
>PHG181007053
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
83017
83093
+
His
GTG
[ENA]
¡û
Identical group No.450677 (1 seq.)
>PHG183001696
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
77690
77766
+
His
GTG
[ENA]
¡û
Identical group No.450678 (1 seq.)
>PHG183000677
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
70676
70751
+
His
GTG
[ENA]
¡û
Identical group No.572813 (5 seq.)
>PHG181008501
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
94356
94429
+
His
GTG
[ENA]
¡û
>PHG181008537
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
96799
96872
+
His
GTG
[ENA]
¡û
>PHG181008570
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
98010
98084
+
His
GTG
[ENA]
¡û
>PHG181008650
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
95750
95823
+
His
GTG
[ENA]
¡û
>W1810079371
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
11723
11796
+
His
GTG
[ENA]
¡û
Identical group No.581904 (1 seq.)
>PHG181008686
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
94988
95061
+
His
GTG
[ENA]
¡û
Identical group No.611175 (1 seq.)
>PHG183001041
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
93248
93321
+
His
GTG
[ENA]
¡û
Identical group No.612257 (1 seq.)
>PHG14102150
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
150210
150138
-
His
GTG
[ENA]
¡û
Identical group No.652635 (1 seq.)
>PHG181007225
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
74245
74319
+
His
GTG
[ENA]
¡û
Identical group No.684254 (3 seq.)
>PHG181005400
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
95010
95082
+
His
GTG
[ENA]
¡û
>PHG181005435
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
96394
96466
+
His
GTG
[ENA]
¡û
>PHG181005518
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
95368
95440
+
His
GTG
[ENA]
¡û
Identical group No.704807 (1 seq.)
>PHG14101679
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
62400
62474
+
His
GTG
[ENA]
¡û
Identical group No.731976 (1 seq.)
>PHG181008406
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
74266
74340
+
His
GTG
[ENA]
¡û
Identical group No.744955 (1 seq.)
>PHG14102391
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
58681
58753
+
His
GTG
[ENA]
¡û
Identical group No.760732 (1 seq.)
>PHG181008371
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
71464
71537
+
His
GTG
[ENA]
¡û
Identical group No.778886 (1 seq.)
>PHG181001731
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
58228
58300
+
His
GTG
[ENA]
¡û
Identical group No.794638 (3 seq.)
>PHG0300084
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
62321
62394
+
His
GTG
[ENA]
¡û
>PHG183000062
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
62381
62454
+
His
GTG
[ENA]
¡û
>PHG183000611
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
61940
62013
+
His
GTG
[ENA]
¡û
Identical group No.802036 (1 seq.)
>PHG185000337
MH153812
Siphoviridae
Rhodococcus phage Grayson (MH153812)
75926
75997
+
His
GTG
[ENA]
¡û
Identical group No.805596 (2 seq.)
>PHG185000131
KX774321
Siphoviridae
Rhodococcus phage Weasels2 (KX774321)
77464
77535
+
His
GTG
[ENA]
¡û
>PHG185000335
MH153807
Siphoviridae
Rhodococcus phage Peregrin (MH153807)
75855
75926
+
His
GTG
[ENA]
¡û
Identical group No.828338 (1 seq.)
>PHG14101323
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
58081
58152
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK