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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = TAC
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.263769 (1 seq.)
>PHG181000861
KP280063
Siphoviridae
Vibrio phage phi 3 (KP280063)
39980
39903
-
Val
TAC
[ENA]
¡û
Identical group No.269322 (2 seq.)
>PHG181004405
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
15843
15766
-
Val
TAC
[ENA]
¡û
>PHG181004422
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
18152
18229
+
Val
TAC
[ENA]
¡û
Identical group No.415254 (1 seq.)
>PHG14300245
JQ340389
Siphoviridae
Vibrio phage pVp-1 STSV2 (JQ340389)
40772
40848
+
Val
TAC
[ENA]
¡û
Identical group No.480715 (1 seq.)
>PHG181003654
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
35551
35476
-
Val
TAC
[ENA]
¡û
Identical group No.504461 (5 seq.)
>WENV182395146
OIEK01001115
[OIEK] human gut metagenome; human gut
77
2
-
Val
TAC
[ENA]
¢þ
>WENV182951492
OKVU01000787
[OKVU] human gut metagenome; human gut
2207
2282
+
Val
TAC
[ENA]
¢þ
>WENV182953274
OKVY01000028
[OKVY] human gut metagenome; human gut
25357
25282
-
Val
TAC
[ENA]
¢þ
>WENV170658236
JTFP01073372
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
438
513
+
Val
TAC
[ENA]
¢þ
>PHG181006794
MG459987
Siphoviridae
Klebsiella phage Sugarland (MG459987)
37279
37204
-
Val
TAC
[ENA]
¡û
Identical group No.504480 (2 seq.)
>PHG181001767
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
13913
13988
+
Val
TAC
[ENA]
¡û
>PHG181007569
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
13959
14034
+
Val
TAC
[ENA]
¡û
Identical group No.523493 (1 seq.)
>PHG183000233
KT345706
Siphoviridae
Vibrio phage vB_VorS-PVo5 (KT345706)
319
244
-
Val
TAC
[ENA]
¡û
Identical group No.561448 (1 seq.)
>PHG181004982
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
84807
84880
+
Val
TAC
[ENA]
¡û
Identical group No.572807 (6 seq.)
>PHG181008485
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
85766
85839
+
Val
TAC
[ENA]
¡û
>PHG181008520
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
87553
87626
+
Val
TAC
[ENA]
¡û
>PHG181008554
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
87417
87490
+
Val
TAC
[ENA]
¡û
>PHG181008634
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
87110
87183
+
Val
TAC
[ENA]
¡û
>PHG181008669
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
86030
86103
+
Val
TAC
[ENA]
¡û
>W1810079355
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
3133
3206
+
Val
TAC
[ENA]
¡û
Identical group No.619408 (1 seq.)
>PHG183001332
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
77882
77957
+
Val
TAC
[ENA]
¡û
Identical group No.638991 (1 seq.)
>PHG183001324
MG649966
Siphoviridae
Vibrio phage Ceto (MG649966)
75740
75815
+
Val
TAC
[ENA]
¡û
Identical group No.697190 (1 seq.)
>PHG14101897
JX195166
Siphoviridae
Pectobacterium phage My1 (JX195166)
30007
29933
-
Val
TAC
[ENA]
¡û
Identical group No.731979 (2 seq.)
>PHG181008378
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
80361
80433
+
Val
TAC
[ENA]
¡û
>PHG181008413
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
84786
84858
+
Val
TAC
[ENA]
¡û
Identical group No.731984 (1 seq.)
>PHG181008612
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
86418
86490
+
Val
TAC
[ENA]
¡û
Identical group No.739265 (1 seq.)
>PHG14100981
JF937105
Siphoviridae
Mycobacterium phage Rey (JF937105)
61563
61635
+
Val
TAC
[ENA]
¡û
Identical group No.750786 (1 seq.)
>PHG181006019
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
99332
99404
+
Val
TAC
[ENA]
¡û
Identical group No.761251 (2 seq.)
>PHG181001735
KT591491
Siphoviridae
Mycobacterium phage Bricole (KT591491)
60010
60082
+
Val
TAC
[ENA]
¡û
>PHG14101327
JN699628
Siphoviridae
Mycobacterium phage Bongo (JN699628)
59862
59934
+
Val
TAC
[ENA]
¡û
Identical group No.778889 (1 seq.)
>PHG181004228
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
67270
67344
+
Val
TAC
[ENA]
¡û
Identical group No.778899 (1 seq.)
>PHG181007231
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
76298
76370
+
Val
TAC
[ENA]
¡û
Identical group No.779627 (2 seq.)
>PHG181005467
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
86989
87060
+
Val
TAC
[ENA]
¡û
>PHG14103290
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
87323
87394
+
Val
TAC
[ENA]
¡û
Identical group No.793246 (3 seq.)
>PHG181003818
KY223999
Siphoviridae
Mycobacterium phage MrMagoo (KY223999)
61593
61664
+
Val
TAC
[ENA]
¡û
>PHG181004360
KY783914
Siphoviridae
Mycobacterium phage GardenSalsa (KY783914)
61592
61663
+
Val
TAC
[ENA]
¡û
>PHG181005181
MF319184
Siphoviridae
Mycobacterium phage GenevaB15 (MF319184)
61397
61468
+
Val
TAC
[ENA]
¡û
Identical group No.793249 (3 seq.)
>PHG181005383
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
86302
86373
+
Val
TAC
[ENA]
¡û
>PHG181005418
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
87684
87755
+
Val
TAC
[ENA]
¡û
>PHG181005501
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
86658
86729
+
Val
TAC
[ENA]
¡û
Identical group No.793258 (2 seq.)
>PHG181007137
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
61419
61492
+
Val
TAC
[ENA]
¡û
>PHG181007149
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
59236
59309
+
Val
TAC
[ENA]
¡û
Identical group No.794640 (3 seq.)
>PHG0300080
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
60438
60509
+
Val
TAC
[ENA]
¡û
>PHG183000059
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
60392
60463
+
Val
TAC
[ENA]
¡û
>PHG183000609
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
60098
60169
+
Val
TAC
[ENA]
¡û
Identical group No.797186 (2 seq.)
>WENV183355977
OLXE01000031
[OLXE] human gut metagenome; feces
63975
64048
+
Val
TAC
[ENA]
¢þ
>PHG14102796
KJ190157
Siphoviridae
Escherichia phage vB_EcoS_FFH1 TahiMoana (KJ190157)
31045
30972
-
Val
TAC
[ENA]
¡û
Identical group No.798536 (32 seq.)
>PHG0100369
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
34022
33949
-
Val
TAC
[ENA]
¡û
>PHG181002413
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
33515
33442
-
Val
TAC
[ENA]
¡û
>PHG181002504
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
32626
32553
-
Val
TAC
[ENA]
¡û
>PHG181004375
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
33025
32952
-
Val
TAC
[ENA]
¡û
>PHG181004853
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
88418
88491
+
Val
TAC
[ENA]
¡û
>PHG181005585
MF402939
Siphoviridae
Escherichia phage OSYSP (MF402939)
4566
4493
-
Val
TAC
[ENA]
¡û
>PHG181005636
MF431730
Siphoviridae
Bacteriophage T5-like chee24 (MF431730)
31999
31926
-
Val
TAC
[ENA]
¡û
>PHG181005655
MF431731
Siphoviridae
Bacteriophage T5-like pork27 (MF431731)
31998
31925
-
Val
TAC
[ENA]
¡û
>PHG181005674
MF431732
Siphoviridae
Bacteriophage T5-like pork29 (MF431732)
31999
31926
-
Val
TAC
[ENA]
¡û
>PHG181005693
MF431733
Siphoviridae
Bacteriophage T5-like saus47N (MF431733)
31999
31926
-
Val
TAC
[ENA]
¡û
>PHG181005712
MF431734
Siphoviridae
Bacteriophage T5-like saus111K (MF431734)
31999
31926
-
Val
TAC
[ENA]
¡û
>PHG181005731
MF431735
Siphoviridae
Bacteriophage T5-like poul124 (MF431735)
32008
31935
-
Val
TAC
[ENA]
¡û
>PHG181005752
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181005775
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181005798
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181005821
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181005844
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181005867
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
32962
32889
-
Val
TAC
[ENA]
¡û
>PHG181006457
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
11145
11218
+
Val
TAC
[ENA]
¡û
>PHG181006763
MG387042
Siphoviridae
Salmonella phage SP3 (MG387042)
29652
29579
-
Val
TAC
[ENA]
¡û
>PHG181008044
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
75960
76033
+
Val
TAC
[ENA]
¡û
>PHG181008067
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
74701
74774
+
Val
TAC
[ENA]
¡û
>PHG181008094
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
74371
74444
+
Val
TAC
[ENA]
¡û
>PHG181008122
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
77795
77868
+
Val
TAC
[ENA]
¡û
>PHG181008142
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
75458
75531
+
Val
TAC
[ENA]
¡û
>PHG181008164
MH370377
Siphoviridae
Salmonella phage S130 (MH370377)
74892
74965
+
Val
TAC
[ENA]
¡û
>PHG181008183
MH370378
Siphoviridae
Salmonella phage S131 (MH370378)
74892
74965
+
Val
TAC
[ENA]
¡û
>PHG181008201
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
80539
80612
+
Val
TAC
[ENA]
¡û
>PHG181008223
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
74701
74774
+
Val
TAC
[ENA]
¡û
>PHG181008250
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
75538
75611
+
Val
TAC
[ENA]
¡û
>PHG14100415
HE956708
Siphoviridae
Yersinia phage phiR201 TP-J34 (HE956708)
32457
32384
-
Val
TAC
[ENA]
¡û
>PHG14103110
KM236244
Siphoviridae
Salmonella virus Stitch LIKBL0011 (KM236244)
32440
32367
-
Val
TAC
[ENA]
¡û
Identical group No.798539 (1 seq.)
>PHG181006367
MF979564
Siphoviridae
Pectobacterium phage DU_PP_V (MF979564)
31380
31307
-
Val
TAC
[ENA]
¡û
Identical group No.806777 (1 seq.)
>PHG0300019
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
4402
4329
-
Val
TAC
[ENA]
¡û
Identical group No.812184 (1 seq.)
>PHG181003941
KY363465
Siphoviridae
Providencia phage vB_PreS_PR1 (KY363465)
36252
36179
-
Val
TAC
[ENA]
¡û
Identical group No.814995 (2 seq.)
>PHG181005313
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
84157
84228
+
Val
TAC
[ENA]
¡û
>PHG181005347
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
86455
86526
+
Val
TAC
[ENA]
¡û
Identical group No.816381 (3 seq.)
>PHG0100300
AY543070
Siphoviridae
Escherichia virus T5 NCTC11261 (AY543070)
32154
32081
-
Val
TAC
[ENA]
¡û
>PHG0100313
AY587007
Siphoviridae
Escherichia virus T5 ATCC 11303-B5 (AY587007)
32075
32002
-
Val
TAC
[ENA]
¡û
>PHG0100332
AY692264
Siphoviridae
Escherichia virus T5 st0 deletion mutant (AY692264)
32157
32084
-
Val
TAC
[ENA]
¡û
Identical group No.818058 (1 seq.)
>PHG181006038
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
44503
44430
-
Val
TAC
[ENA]
¡û
Identical group No.818432 (1 seq.)
>PHG14100780
HQ665011
Siphoviridae
Escherichia virus AKFV33 EcoS-CEV2 (HQ665011)
31241
31168
-
Val
TAC
[ENA]
¡û
Identical group No.820892 (1 seq.)
>PHG14102394
KC900379
Siphoviridae
Mycobacterium phage PegLeg phi47:1 (KC900379)
60573
60644
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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