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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = TAT
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18475 (1 seq.)
>PHG181007049
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
78904
78996
+
Ile
TAT
[ENA]
¡û
Identical group No.238309 (5 seq.)
>PHG183000786
MF001358
Siphoviridae
Enterococcus phage EF1 (MF001358)
48585
48660
+
Ile
TAT
[ENA]
¡û
>PHG183000789
MF001361
Siphoviridae
Enterococcus phage EF5 (MF001361)
68761
68686
-
Ile
TAT
[ENA]
¡û
>W1930005157
FRED01000005
Bacillota
Enterococcus faecium [FRED]
127338
127413
+
Ile
TAT
[ENA]
¡û
>W1930005768
FRXU01000005
Bacillota
Enterococcus faecium [FRXU]
127338
127413
+
Ile
TAT
[ENA]
¡û
>W1830000712
PCFY01000005
Bacillota
Enterococcus faecium Hp_24-3 [PCFY]
127338
127413
+
Ile
TAT
[ENA]
¡û
Identical group No.271579 (6 seq.)
>PHG181005308
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
75889
75963
+
Ile
TAT
[ENA]
¡û
>PHG181005342
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
76038
76112
+
Ile
TAT
[ENA]
¡û
>PHG181005378
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
76433
76507
+
Ile
TAT
[ENA]
¡û
>PHG181005413
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
77812
77886
+
Ile
TAT
[ENA]
¡û
>PHG181005496
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
76791
76865
+
Ile
TAT
[ENA]
¡û
>PHG14103285
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
77444
77518
+
Ile
TAT
[ENA]
¡û
Identical group No.347557 (1 seq.)
>PHG181007820
MH153812
Siphoviridae
Rhodococcus phage Grayson (MH153812)
94297
94373
+
Ile
TAT
[ENA]
¡û
Identical group No.380565 (6 seq.)
>PHG181008479
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
76570
76644
+
Ile
TAT
[ENA]
¡û
>PHG181008515
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
77467
77541
+
Ile
TAT
[ENA]
¡û
>PHG181008629
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
76589
76663
+
Ile
TAT
[ENA]
¡û
>PHG181008663
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
76832
76906
+
Ile
TAT
[ENA]
¡û
>W1810079350
PEKU01000040
Actinomycetota
Streptomyces sp. JV178 [PEKU]
3964
4038
+
Ile
TAT
[ENA]
¡û
>W1810079383
PEKU01000484
Actinomycetota
Streptomyces sp. JV178 [PEKU]
1066
992
-
Ile
TAT
[ENA]
¡û
Identical group No.438743 (1 seq.)
>PHG181005462
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
76953
77027
+
Ile
TAT
[ENA]
¡û
Identical group No.450698 (1 seq.)
>PHG181008549
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
78162
78236
+
Ile
TAT
[ENA]
¡û
Identical group No.475702 (18 seq.)
>W131062922
ANKG01000023
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp37 [ANKG]
28618
28545
-
Ile
TAT
[ENA]
¡û
>W131064853
ANML01000012
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp223 [ANML]
28615
28542
-
Ile
TAT
[ENA]
¡û
>W131156322
AQPP01000008
Bacillota
Lacticaseibacillus paracasei LcA [AQPP]
295255
295328
+
Ile
TAT
[ENA]
¡û
>W131181316
ARNV01000004
Bacillota
Lacticaseibacillus paracasei LcY [ARNV]
318951
319024
+
Ile
TAT
[ENA]
¡û
>C171056174
CP017065
Bacillota
Lacticaseibacillus casei LC5 [CP017065]
1146983
1147056
+
Ile
TAT
-
¡û
>WENV183101262
OLNG01019356
[OLNG] human gut metagenome; faeces
400
473
+
Ile
TAT
[ENA]
¢þ
>WENV183130658
OLOA01003891
[OLOA] human gut metagenome; faeces
2899
2826
-
Ile
TAT
[ENA]
¢þ
>C08005889
FM177140
Bacillota
Lacticaseibacillus paracasei BL23 [FM177140]
1264819
1264892
+
Ile
TAT
[Ensembl]
¡û
>WENV183174807
OLPE01015268
[OLPE] human gut metagenome; faeces
1023
1096
+
Ile
TAT
[ENA]
¢þ
>WENV183264522
OLRR01053485
[OLRR] human gut metagenome; faeces
492
419
-
Ile
TAT
[ENA]
¢þ
>PHG181001337
KR905069
Siphoviridae
Lactobacillus phage iLp84 (KR905069)
36908
36981
+
Ile
TAT
[ENA]
¡û
>PHG181002347
KU848186
Siphoviridae
Lactobacillus phage PLE3 (KU848186)
38484
38557
+
Ile
TAT
[ENA]
¡û
>W1810195092
PKQJ01000013
Bacillota
Lacticaseibacillus paracasei DUP 13076 [PKQJ]
28743
28670
-
Ile
TAT
[ENA]
¡û
>W1810705315
QMJF01000001
Bacillota
Lacticaseibacillus paracasei subsp. paracasei KMB_598 [QMJF]
39582
39655
+
Ile
TAT
[ENA]
¡û
>C11112335
CP002618
Bacillota
Lacticaseibacillus paracasei BD-II [CP002618]
1256800
1256873
+
Ile
TAT
[Ensembl]
¡û
>C131020183
HE970764
Bacillota
Lacticaseibacillus paracasei W56 [HE970764]
1263139
1263212
+
Ile
TAT
[Ensembl]
¡û
>W1610585976
LDEJ01000022
Bacillota
Lacticaseibacillus paracasei casei [LDEJ]
44657
44730
+
Ile
TAT
[ENA]
¡û
>W1710705256
LDEJ01000022
Bacillota
Lacticaseibacillus paracasei casei [LDEJ]
44657
44730
+
Ile
TAT
[ENA]
¡û
Identical group No.561447 (1 seq.)
>PHG181004977
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
75913
75986
+
Ile
TAT
[ENA]
¡û
Identical group No.581895 (1 seq.)
>PHG181008416
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
92916
92990
+
Ile
TAT
[ENA]
¡û
Identical group No.581903 (1 seq.)
>PHG181008615
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
95387
95460
+
Ile
TAT
[ENA]
¡û
Identical group No.627268 (1 seq.)
>PHG181008381
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
89149
89223
+
Ile
TAT
[ENA]
¡û
Identical group No.687364 (1 seq.)
>PHG0100649
X98106
Siphoviridae
Lactobacillus phage phig1e PS42D (X98106)
31641
31567
-
Ile
TAT
[ENA]
¡û
Identical group No.752466 (1 seq.)
>PHG0300059
AY692264
Siphoviridae
Escherichia virus T5 st0 deletion mutant (AY692264)
28744
28670
-
Ile
TAT
[ENA]
¡û
Identical group No.776197 (1 seq.)
>PHG0100233
AY236756
Siphoviridae
Lactobacillus virus phiJL1 PaP3 (AY236756)
12
85
+
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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