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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Siphoviridae
Anticodon = TGC
HIT:
43 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235587 (2 seq.)
>PHG181003646
KX845404
Siphoviridae
Klebsiella phage vB_Kpn_IME260 (KX845404)
37383
37305
-
Ala
TGC
[ENA]
¡û
>PHG181006786
MG459987
Siphoviridae
Klebsiella phage Sugarland (MG459987)
39389
39311
-
Ala
TGC
[ENA]
¡û
Identical group No.235588 (1 seq.)
>PHG181004664
LN887948
Siphoviridae
Escherichia phage slur09 (LN887948)
102835
102913
+
Ala
TGC
[ENA]
¡û
Identical group No.236140 (14 seq.)
>WENV170560287
CYGL01000398
[CYGL] human gut metagenome;
11670
11592
-
Ala
TGC
[ENA]
¢þ
>WENV170560410
CYGL01001329
[CYGL] human gut metagenome;
1890
1812
-
Ala
TGC
[ENA]
¢þ
>PHG0200036
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
33031
32953
-
Ala
TGC
[ENA]
¡û
>PHG181004322
KY677846
Siphoviridae
Escherichia phage phiLLS (KY677846)
52872
52948
+
Ala
TGC
[ENA]
¡û
>PHG181005753
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181005776
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181005799
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181005822
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181005845
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181005868
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
32154
32076
-
Ala
TGC
[ENA]
¡û
>PHG181007769
MH102285
Siphoviridae
Salmonella phage vB_SenS_PHB06 (MH102285)
71589
71667
+
Ala
TGC
[ENA]
¡û
>PHG181008095
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
75085
75163
+
Ala
TGC
[ENA]
¡û
>PHG181008143
MH370376
Siphoviridae
Salmonella phage S126 (MH370376)
76274
76352
+
Ala
TGC
[ENA]
¡û
>PHG181008202
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
81367
81445
+
Ala
TGC
[ENA]
¡û
Identical group No.236596 (6 seq.)
>PHG183000958
MF431730
Siphoviridae
Bacteriophage T5-like chee24 (MF431730)
31288
31210
-
Ala
TGC
[ENA]
¡û
>PHG183000964
MF431731
Siphoviridae
Bacteriophage T5-like pork27 (MF431731)
31287
31209
-
Ala
TGC
[ENA]
¡û
>PHG183000970
MF431732
Siphoviridae
Bacteriophage T5-like pork29 (MF431732)
31288
31210
-
Ala
TGC
[ENA]
¡û
>PHG183000976
MF431733
Siphoviridae
Bacteriophage T5-like saus47N (MF431733)
31288
31210
-
Ala
TGC
[ENA]
¡û
>PHG183000982
MF431734
Siphoviridae
Bacteriophage T5-like saus111K (MF431734)
31288
31210
-
Ala
TGC
[ENA]
¡û
>PHG183000988
MF431735
Siphoviridae
Bacteriophage T5-like poul124 (MF431735)
31297
31219
-
Ala
TGC
[ENA]
¡û
Identical group No.236598 (1 seq.)
>PHG181006362
MF979564
Siphoviridae
Pectobacterium phage DU_PP_V (MF979564)
33668
33590
-
Ala
TGC
[ENA]
¡û
Identical group No.236600 (1 seq.)
>PHG181006414
MG030347
Siphoviridae
Proteus phage PM135 (MG030347)
68459
68537
+
Ala
TGC
[ENA]
¡û
Identical group No.236643 (1 seq.)
>PHG14101893
JX195166
Siphoviridae
Pectobacterium phage My1 (JX195166)
32736
32658
-
Ala
TGC
[ENA]
¡û
Identical group No.236953 (7 seq.)
>PHG181002414
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
32801
32723
-
Ala
TGC
[ENA]
¡û
>PHG181002505
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
31912
31834
-
Ala
TGC
[ENA]
¡û
>PHG181004376
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
32289
32211
-
Ala
TGC
[ENA]
¡û
>PHG181006458
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
11881
11959
+
Ala
TGC
[ENA]
¡û
>PHG181007738
MH059636
Myoviridae
Erwinia phage Cronus (MH059636)
167420
167342
-
Ala
TGC
[ENA]
¡û
>PHG181008045
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
76696
76774
+
Ala
TGC
[ENA]
¡û
>PHG181008251
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
76274
76352
+
Ala
TGC
[ENA]
¡û
Identical group No.238310 (2 seq.)
>PHG0500007
AJ604531
Siphoviridae
Salmonella phage 5 K-12 (AJ604531)
4001
3923
-
Ala
TGC
[ENA]
¡û
>PHG183000945
MF402939
Siphoviridae
Escherichia phage OSYSP (MF402939)
3853
3775
-
Ala
TGC
[ENA]
¡û
Identical group No.238647 (1 seq.)
>PHG183001046
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
43782
43704
-
Ala
TGC
[ENA]
¡û
Identical group No.239268 (1 seq.)
>PHG181008123
MH370375
Siphoviridae
Salmonella phage S124 (MH370375)
78527
78605
+
Ala
TGC
[ENA]
¡û
Identical group No.259225 (1 seq.)
>PHG183001754
MH590589
Siphoviridae
Streptomyces phage SparkleGoddess (MH590589)
74051
74126
+
Ala
TGC
[ENA]
¡û
Identical group No.421687 (1 seq.)
>PHG181007042
MG649967
Siphoviridae
Vibrio phage Thalassa (MG649967)
74719
74795
+
Ala
TGC
[ENA]
¡û
Identical group No.438750 (1 seq.)
>PHG181007026
MG649966
Siphoviridae
Vibrio phage Ceto (MG649966)
73838
73914
+
Ala
TGC
[ENA]
¡û
Identical group No.504481 (2 seq.)
>PHG181001768
KT870145
Siphoviridae
Roseobacter phage DSS3P8 (KT870145)
14314
14389
+
Ala
TGC
[ENA]
¡û
>PHG181007570
MH015255
Siphoviridae
Ruegeria phage vB_RpoS-V10 (MH015255)
14360
14435
+
Ala
TGC
[ENA]
¡û
Identical group No.523506 (2 seq.)
>PHG181001566
KT345706
Siphoviridae
Vibrio phage vB_VorS-PVo5 (KT345706)
2033
1958
-
Ala
TGC
[ENA]
¡û
>PHG14101481
JQ340389
Siphoviridae
Vibrio phage pVp-1 STSV2 (JQ340389)
38217
38292
+
Ala
TGC
[ENA]
¡û
Identical group No.525410 (1 seq.)
>PHG14103003
KJ608189
Siphoviridae
Leuconostoc phage LLC-1 LMSP-25 (KJ608189)
29481
29553
+
Ala
TGC
[ENA]
¡û
Identical group No.536327 (19 seq.)
>PHG0100370
CP000917
Siphoviridae
Escherichia virus EPS7 phi812b (CP000917)
32946
32871
-
Ala
TGC
[ENA]
¡û
>PHG181002415
KU927497
Siphoviridae
Salmonella phage 100268_sal2 (KU927497)
32717
32642
-
Ala
TGC
[ENA]
¡û
>PHG181002506
KX017521
Siphoviridae
Salmonella phage 118970_sal2 (KX017521)
31828
31753
-
Ala
TGC
[ENA]
¡û
>PHG181004377
KY787212
Siphoviridae
Salmonella phage BSP22A (KY787212)
32205
32130
-
Ala
TGC
[ENA]
¡û
>PHG181004855
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
89234
89309
+
Ala
TGC
[ENA]
¡û
>PHG181005754
MF431736
Siphoviridae
Bacteriophage T5-like chee130_1 (MF431736)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181005777
MF431737
Siphoviridae
Bacteriophage T5-like saus132 (MF431737)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181005800
MF431738
Siphoviridae
Bacteriophage T5-like poul149 (MF431738)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181005823
MF431739
Siphoviridae
Bacteriophage T5-like chee158 (MF431739)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181005846
MF431740
Siphoviridae
Bacteriophage T5-like cott162 (MF431740)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181005869
MF431741
Siphoviridae
Bacteriophage T5-like saus176N (MF431741)
32070
31995
-
Ala
TGC
[ENA]
¡û
>PHG181006459
MG065642
Siphoviridae
Campylobacter phage A148 (MG065642)
11965
12040
+
Ala
TGC
[ENA]
¡û
>PHG181008046
MH370366
Siphoviridae
Salmonella phage S113 (MH370366)
76780
76855
+
Ala
TGC
[ENA]
¡û
>PHG181008069
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
75612
75687
+
Ala
TGC
[ENA]
¡û
>PHG181008096
MH370369
Siphoviridae
Salmonella phage S116 (MH370369)
75170
75245
+
Ala
TGC
[ENA]
¡û
>PHG181008203
MH370379
Siphoviridae
Salmonella phage S132 (MH370379)
81452
81527
+
Ala
TGC
[ENA]
¡û
>PHG181008225
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
75612
75687
+
Ala
TGC
[ENA]
¡û
>PHG181008252
MH370386
Siphoviridae
Salmonella phage S147 (MH370386)
76358
76433
+
Ala
TGC
[ENA]
¡û
>PHG14103111
KM236244
Siphoviridae
Salmonella virus Stitch LIKBL0011 (KM236244)
31620
31545
-
Ala
TGC
[ENA]
¡û
Identical group No.572047 (1 seq.)
>PHG183000604
KY363465
Siphoviridae
Providencia phage vB_PreS_PR1 (KY363465)
36934
36859
-
Ala
TGC
[ENA]
¡û
Identical group No.581891 (1 seq.)
>PHG181008402
MH536814
Siphoviridae
Streptomyces phage Blueeyedbeauty (MH536814)
72503
72576
+
Ala
TGC
[ENA]
¡û
Identical group No.592241 (1 seq.)
>PHG181006039
MF681663
Siphoviridae
Salmonella phage LVR16A (MF681663)
43698
43623
-
Ala
TGC
[ENA]
¡û
Identical group No.593494 (5 seq.)
>WENV170270387
CERI01086249
[CERI] marine metagenome genome assembly TARA_067_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
547
473
-
Ala
TGC
[ENA]
¢þ
>WENV170275032
CERM01060297
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
558
484
-
Ala
TGC
[ENA]
¢þ
>WENV170277284
CERP01031909
[CERP] marine metagenome genome assembly TARA_067_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
126
200
+
Ala
TGC
[ENA]
¢þ
>WENV170535955
CEWP01130335
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
547
473
-
Ala
TGC
[ENA]
¢þ
>PHG14100718
HQ633071
Siphoviridae
Synechococcus phage S-SKS1 jenny 12G5 (HQ633071)
53814
53740
-
Ala
TGC
[ENA]
¡û
Identical group No.611176 (1 seq.)
>PHG183001042
MF668286
Siphoviridae
Rhodococcus phage Trina (MF668286)
100767
100840
+
Ala
TGC
[ENA]
¡û
Identical group No.627264 (1 seq.)
>PHG181008365
MH536811
Siphoviridae
Streptomyces phage Annadreamy (MH536811)
68586
68659
+
Ala
TGC
[ENA]
¡û
Identical group No.646296 (2 seq.)
>PHG181004396
KY883654
Siphoviridae
Vibrio phage JSF10 (KY883654)
19478
19403
-
Ala
TGC
[ENA]
¡û
>PHG181004413
KY883655
Siphoviridae
Vibrio phage JSF12 (KY883655)
14517
14592
+
Ala
TGC
[ENA]
¡û
Identical group No.652614 (1 seq.)
>PHG183001383
MG757153
Siphoviridae
Streptomyces phage BillNye (MG757153)
72855
72929
+
Ala
TGC
[ENA]
¡û
Identical group No.653925 (2 seq.)
>PHG181005472
MF358541
Siphoviridae
Streptomyces phage Warpy (MF358541)
88879
88951
+
Ala
TGC
[ENA]
¡û
>PHG14103294
KM652554
Siphoviridae
Streptomyces phage Jay2Jay DSS3-P1 (KM652554)
89222
89294
+
Ala
TGC
[ENA]
¡û
Identical group No.684250 (6 seq.)
>PHG181004985
MF155946
Siphoviridae
Streptomyces phage Mildred21 (MF155946)
87077
87149
+
Ala
TGC
[ENA]
¡û
>PHG181005388
MF347638
Siphoviridae
Streptomyces phage Peebs (MF347638)
88007
88079
+
Ala
TGC
[ENA]
¡û
>PHG181005423
MF347639
Siphoviridae
Streptomyces phage Samisti12 (MF347639)
89391
89463
+
Ala
TGC
[ENA]
¡û
>PHG181005506
MF358542
Siphoviridae
Streptomyces phage Sushi23 (MF358542)
88365
88437
+
Ala
TGC
[ENA]
¡û
>PHG181008526
MH576965
Siphoviridae
Streptomyces phage StarPlatinum (MH576965)
89242
89314
+
Ala
TGC
[ENA]
¡û
>PHG181008640
MH590597
Siphoviridae
Streptomyces phage LukeCage (MH590597)
88702
88774
+
Ala
TGC
[ENA]
¡û
Identical group No.684269 (2 seq.)
>PHG181007144
MG676224
Siphoviridae
Aeromonas phage AhSzq-1 (MG676224)
62876
62950
+
Ala
TGC
[ENA]
¡û
>PHG181007156
MG676225
Siphoviridae
Aeromonas phage AhSzw-1 (MG676225)
60772
60846
+
Ala
TGC
[ENA]
¡û
Identical group No.695874 (7 seq.)
>PHG0100301
AY543070
Siphoviridae
Escherichia virus T5 NCTC11261 (AY543070)
31788
31714
-
Ala
TGC
[ENA]
¡û
>PHG0100314
AY587007
Siphoviridae
Escherichia virus T5 ATCC 11303-B5 (AY587007)
31709
31635
-
Ala
TGC
[ENA]
¡û
>PHG0100333
AY692264
Siphoviridae
Escherichia virus T5 st0 deletion mutant (AY692264)
31791
31717
-
Ala
TGC
[ENA]
¡û
>PHG181001252
KR233164
Siphoviridae
Salmonella phage NR01 (KR233164)
373
299
-
Ala
TGC
[ENA]
¡û
>PHG181003799
KY114934
Siphoviridae
Salmonella phage SP01 (KY114934)
87268
87342
+
Ala
TGC
[ENA]
¡û
>PHG181008165
MH370377
Siphoviridae
Salmonella phage S130 (MH370377)
75604
75678
+
Ala
TGC
[ENA]
¡û
>PHG181008184
MH370378
Siphoviridae
Salmonella phage S131 (MH370378)
75604
75678
+
Ala
TGC
[ENA]
¡û
Identical group No.704806 (1 seq.)
>PHG14101680
JX100810
Siphoviridae
Caulobacter phage CcrColossus Lu11 (JX100810)
62479
62553
+
Ala
TGC
[ENA]
¡û
Identical group No.725999 (1 seq.)
>PHG181008591
MH576973
Siphoviridae
Mycobacterium phage Bromden (MH576973)
67014
67086
+
Ala
TGC
[ENA]
¡û
Identical group No.726562 (3 seq.)
>PHG181008491
MH576964
Siphoviridae
Streptomyces phage Starbow (MH576964)
87316
87388
+
Ala
TGC
[ENA]
¡û
>PHG181008675
MH590599
Siphoviridae
Streptomyces phage Karimac (MH590599)
87580
87652
+
Ala
TGC
[ENA]
¡û
>W1810079361
PEKU01000097
Actinomycetota
Streptomyces sp. JV178 [PEKU]
4682
4754
+
Ala
TGC
[ENA]
¡û
Identical group No.731958 (2 seq.)
>PHG181005318
MF347636
Siphoviridae
Streptomyces phage NootNoot (MF347636)
86009
86081
+
Ala
TGC
[ENA]
¡û
>PHG181005352
MF347637
Siphoviridae
Streptomyces phage Paradiddles (MF347637)
88307
88379
+
Ala
TGC
[ENA]
¡û
Identical group No.744253 (1 seq.)
>PHG181001394
KT070867
Siphoviridae
Bacillus phage PBC2 (KT070867)
149514
149440
-
Ala
TGC
[ENA]
¡û
Identical group No.755895 (1 seq.)
>PHG181006632
MG065692
Siphoviridae
Campylobacter phage C13 (MG065692)
10356
10282
-
Ala
TGC
[ENA]
¡û
Identical group No.778891 (1 seq.)
>PHG181004230
KY629563
Siphoviridae
Sphingobium phage Lacusarx (KY629563)
67694
67768
+
Ala
TGC
[ENA]
¡û
Identical group No.778906 (1 seq.)
>PHG181008560
MH576968
Siphoviridae
Streptomyces phage Wofford (MH576968)
89850
89922
+
Ala
TGC
[ENA]
¡û
Identical group No.794639 (1 seq.)
>PHG0300079
DQ398052
Siphoviridae
Mycobacterium phage Wildcat Brazil-1 (DQ398052)
60312
60383
+
Ala
TGC
[ENA]
¡û
Identical group No.797187 (10 seq.)
>WENV183355978
OLXE01000031
[OLXE] human gut metagenome; feces
64695
64768
+
Ala
TGC
[ENA]
¢þ
>WENV183468284
OMEF01002434
[OMEF] human gut metagenome; feces
306
379
+
Ala
TGC
[ENA]
¢þ
>WENV170559967
CYGL01000004
[CYGL] human gut metagenome;
22250
22177
-
Ala
TGC
[ENA]
¢þ
>PHG181000759
KM979354
Siphoviridae
Escherichia phage DT57C (KM979354)
27096
27023
-
Ala
TGC
[ENA]
¡û
>PHG181000765
KM979355
Siphoviridae
Enterobacteria phage DT571/2 (KM979355)
26404
26331
-
Ala
TGC
[ENA]
¡û
>PHG181004459
KY963424
Siphoviridae
Shigella phage SSP1 (KY963424)
110889
110962
+
Ala
TGC
[ENA]
¡û
>PHG181004854
MF001363
Siphoviridae
Salmonella phage SH9 (MF001363)
89154
89227
+
Ala
TGC
[ENA]
¡û
>PHG181007876
MH203051
Siphoviridae
Escherichia phage Gostya9 (MH203051)
27477
27406
-
Ala
TGC
[ENA]
¡û
>PHG181008068
MH370367
Siphoviridae
Salmonella phage S114 (MH370367)
75532
75605
+
Ala
TGC
[ENA]
¡û
>PHG181008224
MH370380
Siphoviridae
Salmonella phage S133 (MH370380)
75532
75605
+
Ala
TGC
[ENA]
¡û
Identical group No.802037 (2 seq.)
>PHG181000801
KP027195
Siphoviridae
Mycobacterium phage Cosmo (KP027195)
60266
60337
+
Ala
TGC
[ENA]
¡û
>PHG181003968
KY385381
Siphoviridae
Mycobacterium phage EniyanLRS (KY385381)
59937
60009
+
Ala
TGC
[ENA]
¡û
Identical group No.806779 (1 seq.)
>PHG0100094
AJ604530
Siphoviridae
Escherichia virus BF23 K-12 (AJ604530)
4036
3963
-
Ala
TGC
[ENA]
¡û
Identical group No.824019 (1 seq.)
>PHG14102158
KC481682
Siphoviridae
Bacillus phage vB_BanS-Tsamsa Gb1 (KC481682)
149274
149201
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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