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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Soil microbial communities from Minnesota Farm
Anticodon = GGG
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244603 (7 seq.)
>WENV180343875
OBLK01120306
[OBLK] soil metagenome; Clay
115
38
-
Pro
GGG
[ENA]
¢þ
>WENV180695287
OCZS013271066
[OCZS] soil metagenome; soil
185
108
-
Pro
GGG
[ENA]
¢þ
>WENV183682290
ORMF010421031
[ORMF] groundwater metagenome; groundwater
79
2
-
Pro
GGG
[ENA]
¢þ
>WENV183689806
ORMF011495540
[ORMF] groundwater metagenome; groundwater
436
513
+
Pro
GGG
[ENA]
¢þ
>WENV170974818
MTKY01076085
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1818
1895
+
Pro
GGG
[ENA]
¢þ
>SRA1047296
SRR035093.504296
454 Sequencing (SRP001814)
424
347
-
Pro
GGG
[SRA]
>WENV077954
AAFX01134737
Soil microbial communities from Minnesota Farm
286
209
-
Pro
GGG
[ENA]
Identical group No.247568 (11 seq.)
>WENV180308546
OBJR01037746
[OBJR] soil metagenome; soil
326
249
-
Pro
GGG
[ENA]
¢þ
>WENV181165482
OEIS01006391
[OEIS] soil metagenome; soil
571
648
+
Pro
GGG
[ENA]
¢þ
>WENV183660879
ORJL010062964
[ORJL] groundwater metagenome; groundwater
349
272
-
Pro
GGG
[ENA]
¢þ
>WENV183680898
ORMF010236908
[ORMF] groundwater metagenome; groundwater
317
240
-
Pro
GGG
[ENA]
¢þ
>WENV183681637
ORMF010339924
[ORMF] groundwater metagenome; groundwater
349
272
-
Pro
GGG
[ENA]
¢þ
>WENV183691971
ORMF011844677
[ORMF] groundwater metagenome; groundwater
390
313
-
Pro
GGG
[ENA]
¢þ
>C191005676
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
2180397
2180474
+
Pro
GGG
-
¡û
>C161001644
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
2613066
2613143
+
Pro
GGG
[Ensembl]
¡û
>C161048024
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
2408125
2408048
-
Pro
GGG
-
¡û
>C161108102
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
1808095
1808018
-
Pro
GGG
[Ensembl]
¡û
>WENV077936
AAFX01129571
Soil microbial communities from Minnesota Farm
516
437
-
Pro
GGG
[ENA]
Identical group No.254496 (2 seq.)
>WENV170556556
CXWL01010365
[CXWL] groundwater metagenome; biofilm material
19389
19466
+
Pro
GGG
[ENA]
¢þ
>WENV077362
AAFX01027135
Soil microbial communities from Minnesota Farm
166
245
+
Pro
GGG
[ENA]
Identical group No.254505 (1 seq.)
>WENV077624
AAFX01074345
Soil microbial communities from Minnesota Farm
697
776
+
Pro
GGG
[ENA]
Identical group No.271692 (137 seq.)
>W1711223913
LXTQ01000011
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
178697
178773
+
Pro
GGG
[ENA]
¡û
>W1711505584
MKVR01000014
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
41568
41492
-
Pro
GGG
[ENA]
¡û
>W1711583486
MNXH01000052
Betaproteobacteria
Gallionellaceae bacterium CG1_02_60_948 [MNXH]
3733
3809
+
Pro
GGG
[ENA]
¡û
>W1711625768
MPIY01000002
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
43981
44057
+
Pro
GGG
[ENA]
¡û
>W131220809
ATZV01000050
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
31723
31647
-
Pro
GGG
[ENA]
¡û
>W131249816
CAUA01000011
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
76253
76329
+
Pro
GGG
[ENA]
¡û
>C014765
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
1036573
1036497
-
Pro
GGG
[Ensembl]
¡û
>C015142
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
553914
553990
+
Pro
GGG
[Ensembl]
¡û
>WENV180041861
LLBZ010615447
[LLBZ] soil metagenome; soil from tomato rhizosphere
4
80
+
Pro
GGG
[ENA]
¢þ
>WENV180111349
OAPN01066171
[OAPN] marine metagenome; 2011
358
282
-
Pro
GGG
[ENA]
¢þ
>WENV180296717
OBJA01001961
[OBJA] soil metagenome; sediment, water from around vicinity
7923
7999
+
Pro
GGG
[ENA]
¢þ
>WENV180345316
OBLM01238923
[OBLM] soil metagenome; soil
195
119
-
Pro
GGG
[ENA]
¢þ
>WENV180371641
OBOI01006569
[OBOI] sediment metagenome; sediment
1823
1899
+
Pro
GGG
[ENA]
¢þ
>w002429
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
1036574
1036501
-
Pro
GGG
[ENA]
¡û
>WENV181144264
OEHO01001040
[OEHO] metagenome; unknown
177
253
+
Pro
GGG
[ENA]
¢þ
>WENV181167882
OEIU01094993
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
374
450
+
Pro
GGG
[ENA]
¢þ
>WENV181293802
OFHG01025696
[OFHG] soil metagenome; Clay
469
545
+
Pro
GGG
[ENA]
¢þ
>WENV181297078
OFHK01008603
[OFHK] soil metagenome; Clay
1302
1378
+
Pro
GGG
[ENA]
¢þ
>WENV181367742
OFQC01008068
[OFQC] freshwater metagenome; Freshwater Lake
441
365
-
Pro
GGG
[ENA]
¢þ
>WENV181368197
OFQK01002973
[OFQK] freshwater metagenome; Freshwater Lake
528
452
-
Pro
GGG
[ENA]
¢þ
>WENV181369277
OFQP01000064
[OFQP] freshwater metagenome; Freshwater Lake
3759
3683
-
Pro
GGG
[ENA]
¢þ
>WENV181369966
OFQR01003618
[OFQR] freshwater metagenome; Freshwater Lake
946
870
-
Pro
GGG
[ENA]
¢þ
>WENV181370266
OFQS01001557
[OFQS] freshwater metagenome; Freshwater Lake
1516
1592
+
Pro
GGG
[ENA]
¢þ
>WENV181370661
OFQT01002366
[OFQT] freshwater metagenome; Freshwater Lake
893
817
-
Pro
GGG
[ENA]
¢þ
>WENV181395677
OFSB01000265
[OFSB] freshwater metagenome; Freshwater Lake
2069
2145
+
Pro
GGG
[ENA]
¢þ
>WENV181835481
OGVI01001463
[OGVI] freshwater metagenome; freshwater
1108
1032
-
Pro
GGG
[ENA]
¢þ
>WENV181835494
OGVI01001667
[OGVI] freshwater metagenome; freshwater
104
28
-
Pro
GGG
[ENA]
¢þ
>WENV181836344
OGVJ01004897
[OGVJ] freshwater metagenome; freshwater
790
714
-
Pro
GGG
[ENA]
¢þ
>WENV181838196
OGVM01018012
[OGVM] freshwater metagenome; freshwater
385
461
+
Pro
GGG
[ENA]
¢þ
>WENV181838466
OGVN01000735
[OGVN] freshwater metagenome; freshwater
3524
3600
+
Pro
GGG
[ENA]
¢þ
>WENV181838681
OGVN01009518
[OGVN] freshwater metagenome; freshwater
1109
1185
+
Pro
GGG
[ENA]
¢þ
>WENV181838951
OGVN01040553
[OGVN] freshwater metagenome; freshwater
104
28
-
Pro
GGG
[ENA]
¢þ
>WENV181839639
OGVO01005227
[OGVO] freshwater metagenome; freshwater
392
316
-
Pro
GGG
[ENA]
¢þ
>WENV181842702
OGVT01013091
[OGVT] freshwater metagenome; freshwater
520
596
+
Pro
GGG
[ENA]
¢þ
>WENV181843280
OGVU01006344
[OGVU] freshwater metagenome; freshwater
1213
1289
+
Pro
GGG
[ENA]
¢þ
>WENV181843912
OGVV01000584
[OGVV] freshwater metagenome; freshwater
1697
1621
-
Pro
GGG
[ENA]
¢þ
>WENV181844206
OGVV01020949
[OGVV] freshwater metagenome; freshwater
381
457
+
Pro
GGG
[ENA]
¢þ
>WENV181844330
OGVV01041313
[OGVV] freshwater metagenome; freshwater
400
324
-
Pro
GGG
[ENA]
¢þ
>WENV181850985
OGWE01004658
[OGWE] freshwater metagenome; freshwater
380
456
+
Pro
GGG
[ENA]
¢þ
>WENV181852468
OGWF01026409
[OGWF] freshwater metagenome; freshwater
184
108
-
Pro
GGG
[ENA]
¢þ
>WENV181854076
OGWJ01008636
[OGWJ] freshwater metagenome; freshwater
893
969
+
Pro
GGG
[ENA]
¢þ
>WENV181857419
OGWO01004581
[OGWO] freshwater metagenome; freshwater
757
833
+
Pro
GGG
[ENA]
¢þ
>WENV183661812
ORJL010138683
[ORJL] groundwater metagenome; groundwater
1544
1620
+
Pro
GGG
[ENA]
¢þ
>WENV183664289
ORJL010363536
[ORJL] groundwater metagenome; groundwater
4150
4226
+
Pro
GGG
[ENA]
¢þ
>WENV183669846
ORJL010884646
[ORJL] groundwater metagenome; groundwater
729
805
+
Pro
GGG
[ENA]
¢þ
>WENV183670751
ORJL010981355
[ORJL] groundwater metagenome; groundwater
271
347
+
Pro
GGG
[ENA]
¢þ
>WENV183674163
ORJL011356670
[ORJL] groundwater metagenome; groundwater
1110
1034
-
Pro
GGG
[ENA]
¢þ
>WENV183677026
ORJL011700769
[ORJL] groundwater metagenome; groundwater
766
841
+
Pro
GGG
[ENA]
¢þ
>WENV183679649
ORMF010091657
[ORMF] groundwater metagenome; groundwater
5
81
+
Pro
GGG
[ENA]
¢þ
>WENV183679709
ORMF010097443
[ORMF] groundwater metagenome; groundwater
5
81
+
Pro
GGG
[ENA]
¢þ
>WENV183684859
ORMF010767566
[ORMF] groundwater metagenome; groundwater
468
544
+
Pro
GGG
[ENA]
¢þ
>WENV183685748
ORMF010893797
[ORMF] groundwater metagenome; groundwater
366
290
-
Pro
GGG
[ENA]
¢þ
>WENV183686449
ORMF011002612
[ORMF] groundwater metagenome; groundwater
1
77
+
Pro
GGG
[ENA]
¢þ
>WENV183687305
ORMF011125796
[ORMF] groundwater metagenome; groundwater
1691
1615
-
Pro
GGG
[ENA]
¢þ
>WENV183689852
ORMF011502880
[ORMF] groundwater metagenome; groundwater
2313
2389
+
Pro
GGG
[ENA]
¢þ
>WENV183690142
ORMF011549486
[ORMF] groundwater metagenome; groundwater
511
435
-
Pro
GGG
[ENA]
¢þ
>WENV183691458
ORMF011766292
[ORMF] groundwater metagenome; groundwater
202
278
+
Pro
GGG
[ENA]
¢þ
>WENV183694720
ORMF012278890
[ORMF] groundwater metagenome; groundwater
194889
194965
+
Pro
GGG
[ENA]
¢þ
>WENV183695504
ORMF012401453
[ORMF] groundwater metagenome; groundwater
272
348
+
Pro
GGG
[ENA]
¢þ
>WENV170461955
CEVD01031985
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1577
1501
-
Pro
GGG
[ENA]
¢þ
>WENV170552238
CXWJ01048626
[CXWJ] wastewater metagenome; activated sludge
2131
2055
-
Pro
GGG
[ENA]
¢þ
>WENV170554037
CXWK01043999
[CXWK] wastewater metagenome; activated sludge
243
167
-
Pro
GGG
[ENA]
¢þ
>WENV170557292
CXWL01023178
[CXWL] groundwater metagenome; biofilm material
8506
8582
+
Pro
GGG
[ENA]
¢þ
>WENV170559057
CXWL01108435
[CXWL] groundwater metagenome; biofilm material
239
315
+
Pro
GGG
[ENA]
¢þ
>WENV170577863
FSSH01002176
[FSSH] freshwater metagenome; drinking water
8674
8750
+
Pro
GGG
[ENA]
¢þ
>WENV170598699
FUWD010045211
[FUWD] metagenome; unknown
963
887
-
Pro
GGG
[ENA]
¢þ
>WENV170619725
FUWD013020117
[FUWD] metagenome; unknown
105
181
+
Pro
GGG
[ENA]
¢þ
>WENV170627847
FUWD013238446
[FUWD] metagenome; unknown
105
181
+
Pro
GGG
[ENA]
¢þ
>WENV170650969
JRYE01092345
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
77
1
-
Pro
GGG
[ENA]
¢þ
>C181049300
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
1013391
1013467
+
Pro
GGG
-
¡û
>C181187695
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
894516
894440
-
Pro
GGG
-
¡û
>W141558414
JHVX01000003
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
301490
301414
-
Pro
GGG
[ENA]
¡û
>W1910126436
BGOW01000030
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
17991
17915
-
Pro
GGG
[ENA]
¡û
>W1910226513
FMWO01000065
Betaproteobacteria
Nitrosomonas mobilis [FMWO]
11382
11306
-
Pro
GGG
[ENA]
¡û
>W1910228538
FNVK01000001
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
248893
248969
+
Pro
GGG
[ENA]
¡û
>W1910942188
NJGG01000002
Betaproteobacteria
Polynucleobacter cosmopolitanus MWH-MoIso2 [NJGG]
232967
232891
-
Pro
GGG
[ENA]
¡û
>W1911494557
OBKE01051899
Unclassified
bacterium [OBKE]
347
271
-
Pro
GGG
[ENA]
¡û
>W1911496893
OCMZ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
1048470
1048546
+
Pro
GGG
[ENA]
¡û
>W1810463577
PZZR01000001
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
357787
357711
-
Pro
GGG
[ENA]
¡û
>W1810463659
PZZS01000033
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
6908
6832
-
Pro
GGG
[ENA]
¡û
>W1810463688
PZZT01000015
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
72904
72828
-
Pro
GGG
[ENA]
¡û
>W1810464080
QAAC01000006
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
70978
71054
+
Pro
GGG
[ENA]
¡û
>W1810464193
QAAE01000019
Betaproteobacteria
Nitrosomonas aestuarii Nm36 [QAAE]
51631
51555
-
Pro
GGG
[ENA]
¡û
>W1810476857
QAOI01000022
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
8776
8852
+
Pro
GGG
[ENA]
¡û
>W1810476926
QAOK01000001
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
57764
57688
-
Pro
GGG
[ENA]
¡û
>W1810477142
QAOO01000042
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
8107
8183
+
Pro
GGG
[ENA]
¡û
>W1810477267
QAOR01000006
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
70979
71055
+
Pro
GGG
[ENA]
¡û
>W1810477415
QAOU01000003
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
307539
307615
+
Pro
GGG
[ENA]
¡û
>W1810503396
QBKC01000001
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
317865
317941
+
Pro
GGG
[ENA]
¡û
>W1810658852
QJJP01000043
Betaproteobacteria
Nitrosomonas sp. Nm84 [QJJP]
3737
3661
-
Pro
GGG
[ENA]
¡û
>W1810696164
QLTB01000002
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
149254
149178
-
Pro
GGG
[ENA]
¡û
>W1810696204
QLTC01000001
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
206099
206023
-
Pro
GGG
[ENA]
¡û
>W1810696250
QLTD01000001
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
364732
364808
+
Pro
GGG
[ENA]
¡û
>W1810696307
QLTE01000012
Betaproteobacteria
Nitrosomonas sp. Nm143 [QLTE]
9345
9421
+
Pro
GGG
[ENA]
¡û
>W1810699152
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1319413
1319337
-
Pro
GGG
[ENA]
¡û
>W1810699199
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
599144
599068
-
Pro
GGG
[ENA]
¡û
>C151082892
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
277756
277680
-
Pro
GGG
[Ensembl]
¡û
>C151094470
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
1261404
1261328
-
Pro
GGG
-
¡û
>W1511508746
JXQM01000001
Betaproteobacteria
Nitrosospira sp. NpAV [JXQM]
363201
363125
-
Pro
GGG
[ENA]
¡û
>W1610574707
JZQZ01000295
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
7308
7384
+
Pro
GGG
[ENA]
¡û
>WENV077325
AAFX01023541
Soil microbial communities from Minnesota Farm
533
611
+
Pro
GGG
[ENA]
>W1611008284
LXTQ01000011
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
178697
178773
+
Pro
GGG
[ENA]
¡û
>W1710505944
FMUF01000001
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
169676
169600
-
Pro
GGG
[ENA]
¡û
>W1710507278
FMVD01000005
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
201325
201249
-
Pro
GGG
[ENA]
¡û
>W1710507933
FMVQ01000005
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
72725
72801
+
Pro
GGG
[ENA]
¡û
>W1710509155
FMWY01000014
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
70727
70651
-
Pro
GGG
[ENA]
¡û
>W1710517418
FNDH01000054
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
9719
9795
+
Pro
GGG
[ENA]
¡û
>W1710527333
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
1018136
1018212
+
Pro
GGG
[ENA]
¡û
>W1710528549
FNNH01000050
Betaproteobacteria
Nitrosomonas communis [FNNH]
10036
10112
+
Pro
GGG
[ENA]
¡û
>W1710529383
FNNX01000055
Betaproteobacteria
Nitrosomonas europaea [FNNX]
4911
4835
-
Pro
GGG
[ENA]
¡û
>W1710529726
FNOE01000034
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
18326
18250
-
Pro
GGG
[ENA]
¡û
>W1710530708
FNOY01000071
Betaproteobacteria
Nitrosomonas halophila [FNOY]
5309
5233
-
Pro
GGG
[ENA]
¡û
>W1710531208
FNPJ01000075
Betaproteobacteria
Nitrosomonas sp. Nm33 [FNPJ]
8017
8093
+
Pro
GGG
[ENA]
¡û
>W1710531589
FNPQ01000053
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
9721
9797
+
Pro
GGG
[ENA]
¡û
>W1710532577
FNQL01000001
Betaproteobacteria
Nitrosospira multiformis [FNQL]
119351
119275
-
Pro
GGG
[ENA]
¡û
>W1710545195
FOBH01000006
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
46983
47059
+
Pro
GGG
[ENA]
¡û
>W1710546986
FOCP01000002
Betaproteobacteria
Nitrosomonas marina [FOCP]
267670
267594
-
Pro
GGG
[ENA]
¡û
>W1710547213
FOCT01000002
Betaproteobacteria
Nitrosospira multiformis [FOCT]
153162
153086
-
Pro
GGG
[ENA]
¡û
>W1710548191
FODO01000009
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
123155
123079
-
Pro
GGG
[ENA]
¡û
>W1710548581
FODX01000002
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
160784
160708
-
Pro
GGG
[ENA]
¡û
>W1710551719
FOGH01000058
Betaproteobacteria
Nitrosomonas sp. Nm51 [FOGH]
11267
11191
-
Pro
GGG
[ENA]
¡û
>W1710553107
FOHI01000002
Betaproteobacteria
Nitrosospira multiformis [FOHI]
356266
356342
+
Pro
GGG
[ENA]
¡û
>W1710553944
FOIA01000034
Betaproteobacteria
Nitrosomonas marina [FOIA]
25686
25610
-
Pro
GGG
[ENA]
¡û
>W1710554058
FOID01000055
Betaproteobacteria
Nitrosomonas europaea [FOID]
4911
4835
-
Pro
GGG
[ENA]
¡û
>W1710560177
FONE01000029
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
8847
8923
+
Pro
GGG
[ENA]
¡û
>W1710563617
FOPV01000001
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
308714
308790
+
Pro
GGG
[ENA]
¡û
>W1710565320
FORD01000044
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
12219
12143
-
Pro
GGG
[ENA]
¡û
>W1710567277
FOSP01000023
Betaproteobacteria
Nitrosomonas aestuarii [FOSP]
8942
9018
+
Pro
GGG
[ENA]
¡û
>W1710569066
FOUB01000072
Betaproteobacteria
Nitrosomonas communis [FOUB]
6854
6778
-
Pro
GGG
[ENA]
¡û
>W1710569237
FOUF01000041
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
6968
6892
-
Pro
GGG
[ENA]
¡û
>W1710570774
FOVJ01000002
Betaproteobacteria
Nitrosospira briensis [FOVJ]
299439
299363
-
Pro
GGG
[ENA]
¡û
>W1710571459
FOVY01000002
Betaproteobacteria
Nitrosospira briensis [FOVY]
283038
283114
+
Pro
GGG
[ENA]
¡û
>W1710579556
FPIQ01000001
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
130999
131075
+
Pro
GGG
[ENA]
¡û
>W1710591582
FRBV01000001
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
537933
537857
-
Pro
GGG
[ENA]
¡û
>W1710600419
FUWK01000052
Betaproteobacteria
Nitrosomonas europaea [FUWK]
9088
9164
+
Pro
GGG
[ENA]
¡û
>W1710610219
FYEX01000002
Betaproteobacteria
Polynucleobacter victoriensis MWH-VicM1 [FYEX]
208958
208882
-
Pro
GGG
[ENA]
¡û
>W1710691942
JZQZ01000295
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
7308
7384
+
Pro
GGG
[ENA]
¡û
Identical group No.280634 (2 seq.)
>WENV170990196
MWVZ01259122
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
97
171
+
Pro
GGG
[ENA]
¢þ
>WENV077506
AAFX01049745
Soil microbial communities from Minnesota Farm
167
89
-
Pro
GGG
[ENA]
Identical group No.280667 (22 seq.)
>W1711573683
MNDR01000006
Gemmatimonadota
Gemmatimonadetes bacterium 13_2_20CM_2_65_7 [MNDR]
510
436
-
Pro
GGG
[ENA]
¡û
>W1711574770
MNGF01000069
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_3_66_12 [MNGF]
771
698
-
Pro
GGG
[ENA]
¡û
>W1711574799
MNGG01000066
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_40CM_3_65_8 [MNGG]
21410
21484
+
Pro
GGG
[ENA]
¡û
>W1711575351
MNID01000005
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_20CM_66_74 [MNID]
1395
1469
+
Pro
GGG
[ENA]
¡û
>W1711575518
MNIS01000022
Gemmatimonadota
Gemmatimonadetes bacterium 13_1_20CM_4_66_11 [MNIS]
1558
1485
-
Pro
GGG
[ENA]
¡û
>WENV180292202
OBIV01349145
[OBIV] soil metagenome; Clay
265
189
-
Pro
GGG
[ENA]
¢þ
>WENV180304034
OBJH01004632
[OBJH] soil metagenome; soil
156
229
+
Pro
GGG
[ENA]
¢þ
>WENV180344956
OBLL01394716
[OBLL] soil metagenome; soil
92
19
-
Pro
GGG
[ENA]
¢þ
>WENV180692834
OCZS010795859
[OCZS] soil metagenome; soil
186
113
-
Pro
GGG
[ENA]
¢þ
>WENV181165347
OEIR01761297
[OEIR] soil metagenome; soil
119
46
-
Pro
GGG
[ENA]
¢þ
>WENV181191678
OEPS010162152
[OEPS] soil metagenome; soil
271
198
-
Pro
GGG
[ENA]
¢þ
>WENV181293839
OFHG01029243
[OFHG] soil metagenome; Clay
958
1032
+
Pro
GGG
[ENA]
¢þ
>WENV181298420
OFHL01099343
[OFHL] soil metagenome; Clay
320
394
+
Pro
GGG
[ENA]
¢þ
>WENV183725149
PJQE01171847
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
160
233
+
Pro
GGG
[ENA]
¢þ
>WENV183747916
PPFU01002925
[PPFU] hypolithon metagenome; Antarctic Hypolithon
22129
22202
+
Pro
GGG
[ENA]
¢þ
>WENV170634998
JAHE01165171
[JAHE] sediment metagenome; lake sediment
318
394
+
Pro
GGG
[ENA]
¢þ
>WENV170990453
MWWA01007320
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
1885
1809
-
Pro
GGG
[ENA]
¢þ
>WENV170992747
MWWB01078682
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
165
89
-
Pro
GGG
[ENA]
¢þ
>WENV170996826
MWWF01425228
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
287
214
-
Pro
GGG
[ENA]
¢þ
>WENV170996827
MWWF01425228
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
85
12
-
Pro
GGG
[ENA]
¢þ
>SRA1003065
SRR002326.179423
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
265
192
-
Pro
GGG
[SRA]
>WENV077669
AAFX01084115
Soil microbial communities from Minnesota Farm
239
163
-
Pro
GGG
[ENA]
Identical group No.280849 (7 seq.)
>WENV180304351
OBJI01007886
[OBJI] soil metagenome; soil
101
25
-
Pro
GGG
[ENA]
¢þ
>WENV180694404
OCZS012281415
[OCZS] soil metagenome; soil
145
69
-
Pro
GGG
[ENA]
¢þ
>WENV181144940
OEHO01139199
[OEHO] metagenome; unknown
88
164
+
Pro
GGG
[ENA]
¢þ
>WENV181155462
OEID01180664
[OEID] soil metagenome; soil
125
201
+
Pro
GGG
[ENA]
¢þ
>WENV183092897
OLLN01000399
[OLLN] soil metagenome; soil
49016
49092
+
Pro
GGG
[ENA]
¢þ
>WENV170991712
MWWA01295618
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
302
378
+
Pro
GGG
[ENA]
¢þ
>WENV077950
AAFX01133600
Soil microbial communities from Minnesota Farm
269
191
-
Pro
GGG
[ENA]
Identical group No.287564 (2 seq.)
>WENV181166874
OEIU01003644
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
909
985
+
Pro
GGG
[ENA]
¢þ
>WENV077411
AAFX01033516
Soil microbial communities from Minnesota Farm
147
225
+
Pro
GGG
[ENA]
Identical group No.294174 (26 seq.)
>W1710811740
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1710865770
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>W131231914
AUIV01000010
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
81924
82000
+
Pro
GGG
[ENA]
¡û
>WENV180298317
OBJA01272481
[OBJA] soil metagenome; sediment, water from around vicinity
215
291
+
Pro
GGG
[ENA]
¢þ
>WENV181171929
OEIV010410522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
171
95
-
Pro
GGG
[ENA]
¢þ
>WENV183731534
PJTT01000018
[PJTT] soil metagenome; Soil (2) enriched on wood chips
227478
227554
+
Pro
GGG
[ENA]
¢þ
>WENV170009710
APMI01002088
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
298
222
-
Pro
GGG
[ENA]
¢þ
>WENV170010720
APMI01026094
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2103
2179
+
Pro
GGG
[ENA]
¢þ
>WENV170011123
APMI01044653
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2090
2014
-
Pro
GGG
[ENA]
¢þ
>WENV170011975
APMI01107486
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2410
2486
+
Pro
GGG
[ENA]
¢þ
>WENV170574464
FLYM01041370
[FLYM] hot springs metagenome; Sediment
113
37
-
Pro
GGG
[ENA]
¢þ
>WENV170650628
JRYE01007282
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
469
545
+
Pro
GGG
[ENA]
¢þ
>WENV170654608
JRYL01001975
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
112
188
+
Pro
GGG
[ENA]
¢þ
>C181080839
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
2817365
2817289
-
Pro
GGG
-
¡û
>W1911162528
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
366295
366371
+
Pro
GGG
[ENA]
¡û
>W1911218351
NRQR01000013
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
138883
138807
-
Pro
GGG
[ENA]
¡û
>W1911283839
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
248864
248788
-
Pro
GGG
[ENA]
¡û
>W1810195874
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
2085510
2085586
+
Pro
GGG
[ENA]
¡û
>W1810692809
QLKV01000011
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
101599
101675
+
Pro
GGG
[ENA]
¡û
>W1810914457
QVPD01000001
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
115649
115573
-
Pro
GGG
[ENA]
¡û
>W1610675837
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1610728116
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>WENV077723
AAFX01093916
Soil microbial communities from Minnesota Farm
500
422
-
Pro
GGG
[ENA]
>W1710527408
FNKZ01000002
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
502180
502104
-
Pro
GGG
[ENA]
¡û
>W1710579415
FPCI01000002
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
806560
806636
+
Pro
GGG
[ENA]
¡û
>W1710582998
FQUK01000039
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
8296
8372
+
Pro
GGG
[ENA]
¡û
Identical group No.302852 (19 seq.)
>W1711075396
LSKJ01000519
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
7067
7143
+
Pro
GGG
[ENA]
¡û
>W1711386265
MEFC01000047
Alphaproteobacteria
Rhodospirillales bacterium SCN 65-16 [MEFC]
8595
8519
-
Pro
GGG
[ENA]
¡û
>W1711501630
MKRV01000254
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
22609
22533
-
Pro
GGG
[ENA]
¡û
>WENV180020228
FTCZ01000228
[FTCZ] metagenome; soil
1912
1988
+
Pro
GGG
[ENA]
¢þ
>WENV180344787
OBLL01193214
[OBLL] soil metagenome; soil
65
141
+
Pro
GGG
[ENA]
¢þ
>WENV180372401
OBOI01068393
[OBOI] sediment metagenome; sediment
463
387
-
Pro
GGG
[ENA]
¢þ
>WENV180690390
OCZS010004768
[OCZS] soil metagenome; soil
1660
1584
-
Pro
GGG
[ENA]
¢þ
>WENV181223662
OFDC01063484
[OFDC] hot springs metagenome; Water
603
527
-
Pro
GGG
[ENA]
¢þ
>WENV181227053
OFDN01001294
[OFDN] hot springs metagenome; Water
7911
7987
+
Pro
GGG
[ENA]
¢þ
>W141244518
CAKO01000007
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
165512
165436
-
Pro
GGG
[ENA]
¡û
>WENV183672709
ORJL011201684
[ORJL] groundwater metagenome; groundwater
861
785
-
Pro
GGG
[ENA]
¢þ
>WENV183678156
ORJL011843445
[ORJL] groundwater metagenome; groundwater
3104
3180
+
Pro
GGG
[ENA]
¢þ
>WENV170558344
CXWL01064933
[CXWL] groundwater metagenome; biofilm material
832
756
-
Pro
GGG
[ENA]
¢þ
>WENV170706594
LNAP01004483
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5004
4928
-
Pro
GGG
[ENA]
¢þ
>WENV170712021
LNFM01009185
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3497
3573
+
Pro
GGG
[ENA]
¢þ
>WENV170712423
LNFM01013209
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20156
20080
-
Pro
GGG
[ENA]
¢þ
>W1610914701
LSKJ01000519
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
7067
7143
+
Pro
GGG
[ENA]
¡û
>WENV077234
AAFX01010178
Soil microbial communities from Minnesota Farm
596
674
+
Pro
GGG
[ENA]
>W1710548215
FODP01000001
Alphaproteobacteria
Rhodospirillales bacterium URHD0017 [FODP]
525632
525556
-
Pro
GGG
[ENA]
¡û
Identical group No.309306 (2 seq.)
>WENV180292427
OBIV01443615
[OBIV] soil metagenome; Clay
245
319
+
Pro
GGG
[ENA]
¢þ
>WENV077925
AAFX01127559
Soil microbial communities from Minnesota Farm
248
172
-
Pro
GGG
[ENA]
Identical group No.343197 (11 seq.)
>W1711168555
LVYD01000073
Bacteroidota
Niastella vici [LVYD]
4358
4434
+
Pro
GGG
[ENA]
¡û
>W1711171911
LWBO01000003
Bacteroidota
Niastella koreensis [LWBO]
39316
39240
-
Pro
GGG
[ENA]
¡û
>W1711171969
LWBP01000196
Bacteroidota
Niastella populi [LWBP]
10421
10345
-
Pro
GGG
[ENA]
¡û
>WENV181308351
OFIS01006346
[OFIS] sludge metagenome; sludge
1532
1606
+
Pro
GGG
[ENA]
¢þ
>WENV181401975
OFTY01000005
[OFTY] sludge metagenome; sludge
343897
343823
-
Pro
GGG
[ENA]
¢þ
>WENV181838307
OGVM01036328
[OGVM] freshwater metagenome; freshwater
376
451
+
Pro
GGG
[ENA]
¢þ
>WENV170576679
FRDC01001428
[FRDC] freshwater metagenome; water
67900
67824
-
Pro
GGG
[ENA]
¢þ
>C121007510
CP003178
Bacteroidota
Niastella koreensis GR20-10 [CP003178]
2728852
2728928
+
Pro
GGG
[Ensembl]
¡û
>C161034866
CP011390
Bacteroidota
Flavisolibacter tropicus LCS9 [CP011390]
378063
378139
+
Pro
GGG
[Ensembl]
¡û
>WENV077328
AAFX01023758
Soil microbial communities from Minnesota Farm
545
467
-
Pro
GGG
[ENA]
>WENV077557
AAFX01060931
Soil microbial communities from Minnesota Farm
576
654
+
Pro
GGG
[ENA]
Identical group No.359722 (7 seq.)
>WENV181145048
OEHO01173519
[OEHO] metagenome; unknown
137
61
-
Pro
GGG
[ENA]
¢þ
>WENV181155593
OEID01273929
[OEID] soil metagenome; soil
99
175
+
Pro
GGG
[ENA]
¢þ
>W1910640205
LSRW01000064
Gammaproteobacteria
Steroidobacter cummioxidans 35Y [LSRW]
33298
33222
-
Pro
GGG
[ENA]
¡û
>ENV09003404
ADGO01032481
Compost metagenome contig00001
682
606
-
Pro
GGG
[ENA]
¡û
>ENV09003531
ADGO01079240
Compost metagenome contig00001
894
970
+
Pro
GGG
[ENA]
¡û
>ENV09003548
ADGO01083235
Compost metagenome contig00001
196
272
+
Pro
GGG
[ENA]
¡û
>WENV077454
AAFX01041016
Soil microbial communities from Minnesota Farm
415
337
-
Pro
GGG
[ENA]
Identical group No.360439 (1 seq.)
>WENV077361
AAFX01026753
Soil microbial communities from Minnesota Farm
238
160
-
Pro
GGG
[ENA]
Identical group No.360485 (1 seq.)
>WENV077760
AAFX01101942
Soil microbial communities from Minnesota Farm
817
741
-
Pro
GGG
[ENA]
Identical group No.360494 (1 seq.)
>WENV077828
AAFX01112269
Soil microbial communities from Minnesota Farm
443
367
-
Pro
GGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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