This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Soil microbial communities from Minnesota Farm
Anticodon = TGT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273645 (12 seq.)
>W1710890655
LNBX01000026
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
291493
291417
-
Thr
TGT
[ENA]
¡û
>WENV180015129
FQKF010345436
[FQKF] soil metagenome; Soil
124
197
+
Thr
TGT
[ENA]
¢þ
>WENV180039400
LLBY010064026
[LLBY] soil metagenome; soil from tomato rhizosphere
18458
18534
+
Thr
TGT
[ENA]
¢þ
>WENV181170053
OEIV010021675
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
359
285
-
Thr
TGT
[ENA]
¢þ
>WENV170649940
JRYD01000892
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
325
251
-
Thr
TGT
[ENA]
¢þ
>WENV170653300
JRYI01056812
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
325
251
-
Thr
TGT
[ENA]
¢þ
>WENV170986221
MWVX01022682
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
956
1030
+
Thr
TGT
[ENA]
¢þ
>WENV170991201
MWWA01133428
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
283
359
+
Thr
TGT
[ENA]
¢þ
>WENV170993423
MWWB01299826
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
276
352
+
Thr
TGT
[ENA]
¢þ
>WENV170995000
MWWE01111418
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
226
302
+
Thr
TGT
[ENA]
¢þ
>W1610751092
LNBX01000026
Bacteroidota
Bacteroidetes bacterium OLB10 [LNBX]
291493
291417
-
Thr
TGT
[ENA]
¡û
>WENV077841
AAFX01113388
Soil microbial communities from Minnesota Farm
625
547
-
Thr
TGT
[ENA]
Identical group No.360467 (1 seq.)
>WENV077648
AAFX01081015
Soil microbial communities from Minnesota Farm
500
578
+
Thr
TGT
[ENA]
Identical group No.550644 (1 seq.)
>WENV077409
AAFX01033172
Soil microbial communities from Minnesota Farm
784
707
-
Thr
TGT
[ENA]
Identical group No.550647 (2 seq.)
>WENV170649787
JRYC01137275
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
43
115
+
Thr
TGT
[ENA]
¢þ
>WENV077416
AAFX01034865
Soil microbial communities from Minnesota Farm
712
637
-
Thr
TGT
[ENA]
Identical group No.550661 (1 seq.)
>WENV077493
AAFX01047048
Soil microbial communities from Minnesota Farm
883
808
-
Thr
TGT
[ENA]
Identical group No.550712 (2 seq.)
>WENV170985098
MWVW01021975
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
469
394
-
Thr
TGT
[ENA]
¢þ
>WENV077929
AAFX01127791
Soil microbial communities from Minnesota Farm
632
557
-
Thr
TGT
[ENA]
Identical group No.678507 (4 seq.)
>WENV180038972
LLBY010017217
[LLBY] soil metagenome; soil from tomato rhizosphere
75
1
-
Thr
TGT
[ENA]
¢þ
>WENV180693115
OCZS011010455
[OCZS] soil metagenome; soil
170
244
+
Thr
TGT
[ENA]
¢þ
>WENV077718
AAFX01093691
Soil microbial communities from Minnesota Farm
142
216
+
Thr
TGT
[ENA]
>WENV077847
AAFX01114081
Soil microbial communities from Minnesota Farm
55
129
+
Thr
TGT
[ENA]
Identical group No.697423 (7 seq.)
>WENV181415367
OGCL01009123
[OGCL] hot springs metagenome; Hot spring water
1102
1176
+
Thr
TGT
[ENA]
¢þ
>WENV183670226
ORJL010922893
[ORJL] groundwater metagenome; groundwater
561
635
+
Thr
TGT
[ENA]
¢þ
>WENV183677403
ORJL011755118
[ORJL] groundwater metagenome; groundwater
759
685
-
Thr
TGT
[ENA]
¢þ
>WENV170997373
MWWG01105698
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
301
375
+
Thr
TGT
[ENA]
¢þ
>W1911494433
OBKE01015753
Unclassified
bacterium [OBKE]
233
307
+
Thr
TGT
[ENA]
¡û
>C161029932
CP010951
Betaproteobacteria
Ramlibacter tataouinensis 5-10 [CP010951]
2996157
2996231
+
Thr
TGT
[Ensembl]
¡û
>WENV077293
AAFX01017745
Soil microbial communities from Minnesota Farm
589
663
+
Thr
TGT
[ENA]
Identical group No.712715 (1 seq.)
>WENV077357
AAFX01026390
Soil microbial communities from Minnesota Farm
1091
1165
+
Thr
TGT
[ENA]
Identical group No.712719 (1 seq.)
>WENV077397
AAFX01030916
Soil microbial communities from Minnesota Farm
602
678
+
Thr
TGT
[ENA]
Identical group No.712731 (1 seq.)
>WENV077564
AAFX01062920
Soil microbial communities from Minnesota Farm
403
477
+
Thr
TGT
[ENA]
Identical group No.712735 (1 seq.)
>WENV077588
AAFX01067245
Soil microbial communities from Minnesota Farm
919
845
-
Thr
TGT
[ENA]
Identical group No.712737 (1 seq.)
>WENV077595
AAFX01068984
Soil microbial communities from Minnesota Farm
870
796
-
Thr
TGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK