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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Soil microbial communities from Minnesota Farm
Anticodon = TTT
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490511 (11 seq.)
>W1710860970
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2018397
2018324
-
Lys
TTT
[ENA]
¡û
>W1710867984
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3079078
3079005
-
Lys
TTT
[ENA]
¡û
>W131226746
AUEP01000010
Actinomycetota
Marmoricola sp. URHB0036 [AUEP]
177651
177576
-
Lys
TTT
[ENA]
¡û
>WENV180691201
OCZS010075282
[OCZS] soil metagenome; soil
138
65
-
Lys
TTT
[ENA]
¢þ
>C181144042
CP026952
Actinomycetota
Aeromicrobium chenweiae 592 [CP026952]
467767
467693
-
Lys
TTT
-
¡û
>W141563923
JIAI01000019
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
83663
83588
-
Lys
TTT
[ENA]
¡û
>W1810870279
QUBR01000001
Actinomycetota
Aeromicrobium endophyticum M2KJ-4 [QUBR]
1848989
1848914
-
Lys
TTT
[ENA]
¡û
>C11114876
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
808661
808736
+
Lys
TTT
[Ensembl]
¡û
>W1610723316
LMDH01000001
Actinomycetota
Aeromicrobium sp. Root344 [LMDH]
2018397
2018324
-
Lys
TTT
[ENA]
¡û
>W1610730330
LMIS01000001
Actinomycetota
Aeromicrobium sp. Root236 [LMIS]
3079078
3079005
-
Lys
TTT
[ENA]
¡û
>WENV077693
AAFX01088613
Soil microbial communities from Minnesota Farm
353
428
+
Lys
TTT
[ENA]
Identical group No.491214 (13 seq.)
>W1710856797
LLZQ01000006
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
151099
151024
-
Lys
TTT
[ENA]
¡û
>W1710856866
LLZR01000021
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
164
89
-
Lys
TTT
[ENA]
¡û
>W1711387017
MEGC01000050
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
29170
29245
+
Lys
TTT
[ENA]
¡û
>W1711505651
MKVS01000044
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
29348
29423
+
Lys
TTT
[ENA]
¡û
>W1711506386
MKWI01000035
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
31906
31981
+
Lys
TTT
[ENA]
¡û
>W131160228
AQWK01000008
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AQWK]
17001
16926
-
Lys
TTT
[ENA]
¡û
>W131222148
AUBA01000019
Alphaproteobacteria
Novosphingobium acidiphilum DSM 19966 [AUBA]
59983
60058
+
Lys
TTT
[ENA]
¡û
>WENV181184408
OEKC01000071
[OEKC] metagenome; 1998
8961
8886
-
Lys
TTT
[ENA]
¢þ
>WENV183660872
ORJL010062492
[ORJL] groundwater metagenome; groundwater
1759
1684
-
Lys
TTT
[ENA]
¢þ
>W11151086
AEWJ01000054
Alphaproteobacteria
Novosphingobium nitrogenifigens DSM 19370 [AEWJ]
16731
16656
-
Lys
TTT
[ENA]
¡û
>W1610719178
LLZQ01000006
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
151099
151024
-
Lys
TTT
[ENA]
¡û
>W1610719247
LLZR01000021
Alphaproteobacteria
Novosphingobium sp. Fuku2-ISO-50 [LLZR]
164
89
-
Lys
TTT
[ENA]
¡û
>WENV077842
AAFX01113746
Soil microbial communities from Minnesota Farm
616
693
+
Lys
TTT
[ENA]
Identical group No.496689 (2 seq.)
>WENV181192881
OEPS011156922
[OEPS] soil metagenome; soil
190
118
-
Lys
TTT
[ENA]
¢þ
>WENV077294
AAFX01017873
Soil microbial communities from Minnesota Farm
934
859
-
Lys
TTT
[ENA]
Identical group No.512456 (3 seq.)
>WENV180327574
OBKT01268439
[OBKT] soil metagenome; soil
135
210
+
Lys
TTT
[ENA]
¢þ
>WENV077247
AAFX01012037
Soil microbial communities from Minnesota Farm
488
563
+
Lys
TTT
[ENA]
>WENV077783
AAFX01106606
Soil microbial communities from Minnesota Farm
273
198
-
Lys
TTT
[ENA]
Identical group No.544869 (2 seq.)
>WENV181401632
OFTX01001831
[OFTX] sludge metagenome; sludge
4063
3988
-
Lys
TTT
[ENA]
¢þ
>WENV077605
AAFX01070105
Soil microbial communities from Minnesota Farm
757
682
-
Lys
TTT
[ENA]
Identical group No.550632 (1 seq.)
>WENV077314
AAFX01021612
Soil microbial communities from Minnesota Farm
341
416
+
Lys
TTT
[ENA]
Identical group No.550649 (2 seq.)
>W1810914454
QVPD01000001
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
247011
246936
-
Lys
TTT
[ENA]
¡û
>WENV077420
AAFX01035457
Soil microbial communities from Minnesota Farm
327
404
+
Lys
TTT
[ENA]
Identical group No.550652 (1 seq.)
>WENV077435
AAFX01037919
Soil microbial communities from Minnesota Farm
674
749
+
Lys
TTT
[ENA]
Identical group No.550657 (1 seq.)
>WENV077457
AAFX01041995
Soil microbial communities from Minnesota Farm
462
537
+
Lys
TTT
[ENA]
Identical group No.550665 (1 seq.)
>WENV077520
AAFX01052405
Soil microbial communities from Minnesota Farm
77
152
+
Lys
TTT
[ENA]
Identical group No.550667 (3 seq.)
>WENV077529
AAFX01054040
Soil microbial communities from Minnesota Farm
215
140
-
Lys
TTT
[ENA]
>WENV077644
AAFX01080256
Soil microbial communities from Minnesota Farm
227
152
-
Lys
TTT
[ENA]
>WENV077876
AAFX01117553
Soil microbial communities from Minnesota Farm
161
86
-
Lys
TTT
[ENA]
Identical group No.550677 (1 seq.)
>WENV077602
AAFX01069843
Soil microbial communities from Minnesota Farm
237
162
-
Lys
TTT
[ENA]
Identical group No.550682 (1 seq.)
>WENV077621
AAFX01073620
Soil microbial communities from Minnesota Farm
483
558
+
Lys
TTT
[ENA]
Identical group No.550692 (1 seq.)
>WENV077745
AAFX01098717
Soil microbial communities from Minnesota Farm
756
681
-
Lys
TTT
[ENA]
Identical group No.550694 (3 seq.)
>WENV170556669
CXWL01011868
[CXWL] groundwater metagenome; biofilm material
15630
15703
+
Lys
TTT
[ENA]
¢þ
>WENV170565862
FKKE01001636
[FKKE] freshwater metagenome; freshwater
15632
15707
+
Lys
TTT
[ENA]
¢þ
>WENV077765
AAFX01103175
Soil microbial communities from Minnesota Farm
283
358
+
Lys
TTT
[ENA]
Identical group No.678431 (2 seq.)
>WENV180692589
OCZS010629264
[OCZS] soil metagenome; soil
141
69
-
Lys
TTT
[ENA]
¢þ
>WENV077890
AAFX01119459
Soil microbial communities from Minnesota Farm
24
100
+
Lys
TTT
[ENA]
Identical group No.712705 (1 seq.)
>WENV077277
AAFX01015714
Soil microbial communities from Minnesota Farm
1130
1056
-
Lys
TTT
[ENA]
Identical group No.712714 (1 seq.)
>WENV077341
AAFX01024373
Soil microbial communities from Minnesota Farm
638
714
+
Lys
TTT
[ENA]
Identical group No.712722 (2 seq.)
>WENV170904087
MDTE01007337
[MDTE] marine metagenome; seawater
42387
42461
+
Lys
TTT
[ENA]
¢þ
>WENV077430
AAFX01037706
Soil microbial communities from Minnesota Farm
521
595
+
Lys
TTT
[ENA]
Identical group No.712751 (1 seq.)
>WENV077789
AAFX01107479
Soil microbial communities from Minnesota Farm
501
425
-
Lys
TTT
[ENA]
Identical group No.806093 (1 seq.)
>WENV077439
AAFX01039095
Soil microbial communities from Minnesota Farm
750
677
-
Lys
TTT
[ENA]
Identical group No.806101 (1 seq.)
>WENV077913
AAFX01124102
Soil microbial communities from Minnesota Farm
337
262
-
Lys
TTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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