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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Anticodon = CCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271877 (26 seq.)
>W1710796588
LJSF01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
962
886
-
Arg
CCG
[ENA]
¡û
>C171035299
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
3549934
3550010
+
Arg
CCG
-
¡û
>w028016
ABCR01000006
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
60240
60167
-
Arg
CCG
[ENA]
¡û
>w023619
AAYA01000002
Alphaproteobacteria
Sagittula stellata E-37 [AAYA]
4330
4252
-
Arg
CCG
[ENA]
¡û
>W141065721
AQQW01000001
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
401981
401905
-
Arg
CCG
[ENA]
¡û
>WENV181233970
OFET01000477
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
2542
2466
-
Arg
CCG
[ENA]
¢þ
>WENV181234756
OFEU01004319
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
780
856
+
Arg
CCG
[ENA]
¢þ
>WENV182549186
OJBX01037647
[OJBX] seawater metagenome; Sea water
313
237
-
Arg
CCG
[ENA]
¢þ
>W141278714
JAFT01000005
Alphaproteobacteria
Oceanicola sp. HL-35 [JAFT]
2901282
2901358
+
Arg
CCG
[ENA]
¡û
>ENV08000733
ABMI01030132
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
6
82
+
Arg
CCG
[ENA]
¡û
>WENV183711112
PDWI01061360
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1003
1079
+
Arg
CCG
[ENA]
¢þ
>WENV183715437
PDWI01240905
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
31
107
+
Arg
CCG
[ENA]
¢þ
>WENV183720150
PDWJ01027726
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2822
2746
-
Arg
CCG
[ENA]
¢þ
>WENV170136167
CENV01008210
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
227
303
+
Arg
CCG
[ENA]
¢þ
>WENV170962517
MRWF01018892
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
671
595
-
Arg
CCG
[ENA]
¢þ
>WENV170963738
MRWG01000629
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
21505
21581
+
Arg
CCG
[ENA]
¢þ
>W1911638540
PVWS01000019
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
62819
62895
+
Arg
CCG
[ENA]
¡û
>W1911653485
QDFI01000064
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
7528
7452
-
Arg
CCG
[ENA]
¡û
>SRA1000701
SRR001046.113540
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
6
82
+
Arg
CCG
[SRA]
>W1810061245
PDNI01000005
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
19100
19024
-
Arg
CCG
[ENA]
¡û
>W1810514040
QBUD01000009
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
80833
80909
+
Arg
CCG
[ENA]
¡û
>W1810759659
QPJP01000009
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
80833
80909
+
Arg
CCG
[ENA]
¡û
>W1810762271
QPMK01000003
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
582000
582076
+
Arg
CCG
[ENA]
¡û
>W1610660545
LJSF01000029
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCA08 [LJSF]
962
886
-
Arg
CCG
[ENA]
¡û
>W1710591901
FRCB01000005
Alphaproteobacteria
Roseovarius litoreus [FRCB]
144675
144751
+
Arg
CCG
[ENA]
¡û
>W1710609087
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
3322325
3322401
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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