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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.271875 (2 seq.)
>ENV08000778
ABMI01165479
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
80
7
-
Asn
GTT
[ENA]
¡û
>SRA1000696
SRR001046.100214
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
80
7
-
Asn
GTT
[SRA]
Identical group No.452915 (21 seq.)
>WENV180100563
OAOO01006998
[OAOO] marine metagenome; ENVO:00002010
157
230
+
Asn
GTT
[ENA]
¢þ
>WENV180103045
OAPA01000506
[OAPA] marine metagenome; ENVO:00002010
1900
1827
-
Asn
GTT
[ENA]
¢þ
>WENV180208966
OBAK01001185
[OBAK] marine metagenome; ENVO.00002150
1349
1422
+
Asn
GTT
[ENA]
¢þ
>WENV180209443
OBAL01000900
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
673
600
-
Asn
GTT
[ENA]
¢þ
>WENV180212425
OBAN01034931
[OBAN] marine metagenome; ENVO 00002150
26
101
+
Asn
GTT
[ENA]
¢þ
>WENV180358207
OBNP01009142
[OBNP] marine metagenome; seawater
532
605
+
Asn
GTT
[ENA]
¢þ
>WENV180359547
OBNS01001679
[OBNS] marine metagenome; Seawater
1028
955
-
Asn
GTT
[ENA]
¢þ
>WENV180360619
OBNU01004802
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
499
572
+
Asn
GTT
[ENA]
¢þ
>WENV180361711
OBNW01000082
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
2313
2386
+
Asn
GTT
[ENA]
¢þ
>WENV180368150
OBOF01030475
[OBOF] marine metagenome; ENVO:00002010
107
32
-
Asn
GTT
[ENA]
¢þ
>WENV180392691
OBPP01003317
[OBPP] marine metagenome; ENVO:00002042
782
855
+
Asn
GTT
[ENA]
¢þ
>WENV180393875
OBPR01018269
[OBPR] marine metagenome; ENVO:00002042
189
262
+
Asn
GTT
[ENA]
¢þ
>WENV180398883
OBQB01018877
[OBQB] marine metagenome; ENVO.00002150
247
320
+
Asn
GTT
[ENA]
¢þ
>WENV180591392
OCOV01018070
[OCOV] marine metagenome; ENVO:01000301
264
337
+
Asn
GTT
[ENA]
¢þ
>WENV001680
AACY020047626
Marine microbial communities from Global Ocean Sampling (GOS)
2896
2819
-
Asn
GTT
[ENA]
>WENV181120542
OEFK01009902
[OEFK] marine metagenome; ENVO:00002010 seawater
440
513
+
Asn
GTT
[ENA]
¢þ
>WENV018921
AACY020522105
Marine microbial communities from Global Ocean Sampling (GOS)
2590
2513
-
Asn
GTT
[ENA]
>ENV08000750
ABMI01061465
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
92
17
-
Asn
GTT
[ENA]
¡û
>SRA1000739
SRR001046.242320
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
92
17
-
Asn
GTT
[SRA]
>WENV055870
AACY023242258
Marine microbial communities from Global Ocean Sampling (GOS)
1286
1363
+
Asn
GTT
[ENA]
>WENV070385
AACY023807261
Marine microbial communities from Global Ocean Sampling (GOS)
1354
1277
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK