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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
Anticodon = TGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.452904 (4 seq.)
>W1711256792
LYSX01000016
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
31802
31877
+
Thr
TGT
[ENA]
¡û
>ENV08000770
ABMI01122853
saltern metagenome; microbial fraction from low salinity saltern in San Diego, CA
89
14
-
Thr
TGT
[ENA]
¡û
>SRA1000694
SRR001046.94763
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
89
14
-
Thr
TGT
[SRA]
>W1611019817
LYSX01000016
Gammaproteobacteria
Ectothiorhodospiraceae bacterium BBD 1991-15 [LYSX]
31802
31877
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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