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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789783 (5 seq.)
>W131063630
ANKZ01000001
Gammaproteobacteria
Spiribacter salinus M19-40 [ANKZ]
730173
730100
-
Cys
GCA
[ENA]
¡û
>ENV08001192
ABMS01005266
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
30
103
+
Cys
GCA
[ENA]
¡û
>WENV170702205
LKMJ01000840
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
12203
12276
+
Cys
GCA
[ENA]
¢þ
>SRA1001250
SRR001059.4358
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
29
102
+
Cys
GCA
[SRA]
>C131016224
CP005963
Gammaproteobacteria
Spiribacter salinus M19-40 [CP005963]
809547
809620
+
Cys
GCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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