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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
Anticodon = TGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.117910 (4 seq.)
>ENV08001184
ABMS01001701
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
116
31
-
Ser
TGA
[ENA]
¡û
>W1910695487
MDVL01000242
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
286
372
+
Ser
TGA
[ENA]
¡û
>SRA1001253
SRR001060.2075
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
116
31
-
Ser
TGA
[SRA]
>SRA1001257
SRR001060.8573
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000148)
116
31
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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