tRNA genes clustered and arranged according to each identical group

Stramenopiles

Anticodon = CCA

HIT: 23 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.459397 (75 seq.)
>WENV180103707 OAPB01000563 [OAPB] marine metagenome; Sterile flask 268 342 + Trp CCA [ENA] ¢þ
>WENV180104455 OAPC01009773 [OAPC] marine metagenome; na 804 731 - Trp CCA [ENA] ¢þ
>WENV180210190 OBAL01148157 [OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER 277 205 - Trp CCA [ENA] ¢þ
>WENV180310266 OBJS01390277 [OBJS] beach sand metagenome; beach sand 44 116 + Trp CCA [ENA] ¢þ
>WENV180356652 OBNL01004284 [OBNL] marine metagenome; ENVO:00002010 427 499 + Trp CCA [ENA] ¢þ
>WENV180358795 OBNQ01017002 [OBNQ] marine metagenome; ENVO 00002150 195 268 + Trp CCA [ENA] ¢þ
>WENV180365065 OBOB01006718 [OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER 274 346 + Trp CCA [ENA] ¢þ
>WENV180374566 OBOK01000303 [OBOK] marine metagenome; seawater 3127 3055 - Trp CCA [ENA] ¢þ
>WENV180389942 OBPK01005511 [OBPK] marine metagenome; Sterile flask 1348 1276 - Trp CCA [ENA] ¢þ
>WENV180394727 OBPS01051159 [OBPS] marine metagenome; ENVO:00002010 seawater 364 290 - Trp CCA [ENA] ¢þ
>WENV180589528 OCOS01000001 [OCOS] marine metagenome; Sterile flask 2185 2113 - Trp CCA [ENA] ¢þ
>WENV180593917 OCOY01003520 [OCOY] marine metagenome; ENVO:00002010 1526 1599 + Trp CCA [ENA] ¢þ
>WENV181092579 OEBK01010607 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 352 280 - Trp CCA [ENA] ¢þ
>WENV181162582 OEIO01001508 [OEIO] marine metagenome; sea ice 2352 2278 - Trp CCA [ENA] ¢þ
>WENV181316113 OFJS01013922 [OFJS] marine metagenome; sea ice 496 422 - Trp CCA [ENA] ¢þ
>WENV181370284 OFQS01002196 [OFQS] freshwater metagenome; Freshwater Lake 431 505 + Trp CCA [ENA] ¢þ
>WENV181395883 OFSB01015519 [OFSB] freshwater metagenome; Freshwater Lake 213 287 + Trp CCA [ENA] ¢þ
>WENV183615168 OOEA01087878 [OOEA] marine metagenome; sea ice 381 307 - Trp CCA [ENA] ¢þ
>WENV183615271 OOEB01000512 [OOEB] marine metagenome; sea ice 646 572 - Trp CCA [ENA] ¢þ
>WENV183615912 OOEC01003652 [OOEC] marine metagenome; sea ice 525 451 - Trp CCA [ENA] ¢þ
>WENV183616833 OOEE01003388 [OOEE] marine metagenome; sea ice 73 147 + Trp CCA [ENA] ¢þ
>WENV183617516 OOEG01003812 [OOEG] marine metagenome; sea ice 1226 1152 - Trp CCA [ENA] ¢þ
>WENV183617995 OOFL01001065 [OOFL] marine metagenome; seawater 17 91 + Trp CCA [ENA] ¢þ
>WENV183620699 OOFS01015143 [OOFS] marine metagenome; sea ice 837 763 - Trp CCA [ENA] ¢þ
>WENV183621068 OOFT01004527 [OOFT] marine metagenome; sea ice 289 362 + Trp CCA [ENA] ¢þ
>WENV183621123 OOFT01007356 [OOFT] marine metagenome; sea ice 8 82 + Trp CCA [ENA] ¢þ
>WENV183621442 OOFU01000905 [OOFU] marine metagenome; sea ice 915 989 + Trp CCA [ENA] ¢þ
>WENV183621994 OOFV01002316 [OOFV] marine metagenome; seawater 1282 1354 + Trp CCA [ENA] ¢þ
>WENV183622595 OOFW01000003 [OOFW] marine metagenome; sea ice 4984 4910 - Trp CCA [ENA] ¢þ
>WENV183622972 OOFX01000163 [OOFX] marine metagenome; sea ice 3801 3727 - Trp CCA [ENA] ¢þ
>WENV183623355 OOFY01000083 [OOFY] marine metagenome; sea ice 1988 1914 - Trp CCA [ENA] ¢þ
>WENV183623447 OOGA01001502 [OOGA] marine metagenome; sea ice 649 723 + Trp CCA [ENA] ¢þ
>WENV183624364 OOGD01002885 [OOGD] marine metagenome; sea ice 861 935 + Trp CCA [ENA] ¢þ
>WENV183624581 OOGD01050013 [OOGD] marine metagenome; sea ice 314 240 - Trp CCA [ENA] ¢þ
>WENV183624687 OOGE01000895 [OOGE] marine metagenome; sea ice 2554 2480 - Trp CCA [ENA] ¢þ
>WENV183628066 OOGM01008637 [OOGM] marine metagenome; sea ice 334 260 - Trp CCA [ENA] ¢þ
>WENV183628222 OOGN01000067 [OOGN] marine metagenome; sea ice 5874 5800 - Trp CCA [ENA] ¢þ
>WENV183628658 OOGO01005703 [OOGO] marine metagenome; sea ice 1404 1330 - Trp CCA [ENA] ¢þ
>WENV183630783 OOGU01002307 [OOGU] marine metagenome; sea ice 1679 1753 + Trp CCA [ENA] ¢þ
>WENV170275989 CERM01240505 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2 74 + Trp CCA [ENA] ¢þ
>WENV170297725 CESE01276227 [CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1538 1610 + Trp CCA [ENA] ¢þ
>WENV170305654 CESI01155659 [CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1739 1667 - Trp CCA [ENA] ¢þ
>WENV170325205 CEST01002712 [CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 28230 28158 - Trp CCA [ENA] ¢þ
>WENV170327838 CESU01107116 [CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3466 3538 + Trp CCA [ENA] ¢þ
>WENV170533225 CEWO01108572 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 161 233 + Trp CCA [ENA] ¢þ
>WENV170533468 CEWO01132192 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3517 3445 - Trp CCA [ENA] ¢þ
>WENV170538011 CEWR01045205 [CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 188 115 - Trp CCA [ENA] ¢þ
>WENV170603461 FUWD010310810 [FUWD] metagenome; unknown 98 24 - Trp CCA [ENA] ¢þ
>WENV170639211 JFJP01001700 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 33699 33625 - Trp CCA [ENA] ¢þ
>WENV170639267 JFJP01001724 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 66 139 + Trp CCA [ENA] ¢þ
>WENV170807351 MDSW01097126 [MDSW] marine metagenome; seawater 3707 3635 - Trp CCA [ENA] ¢þ
>WENV170810586 MDSW01151423 [MDSW] marine metagenome; seawater 4522 4450 - Trp CCA [ENA] ¢þ
>WENV170814974 MDSX01002410 [MDSX] marine metagenome; seawater 5439 5367 - Trp CCA [ENA] ¢þ
>WENV170820883 MDSY01013321 [MDSY] marine metagenome; seawater 2546 2474 - Trp CCA [ENA] ¢þ
>WENV170919355 MDTF01008253 [MDTF] marine metagenome; seawater 1742 1814 + Trp CCA [ENA] ¢þ
>CHL1810000617 AP014625 Stramenopiles Triparma laevis (AP014625) 17001 16929 - Trp CCA [ENA] ¡û
>CHL1810002648 GU591327 Alveolata Durinskia baltica CS-38 (GU591327) 26484 26412 - Trp CCA [ENA] ¡û
>CHL1810002674 GU591328 Alveolata Kryptoperidinium foliaceum CCMP1326 (GU591328) 29047 28974 - Trp CCA [ENA] ¡û
>CHL1810005313 JQ088178 Stramenopiles Ulnaria acus (JQ088178) 25997 25925 - Trp CCA [ENA] ¡û
>CHL1810008369 KC509523 Stramenopiles Didymosphenia geminata BCC011 (KC509523) 26882 26809 - Trp CCA [ENA] ¡û
>CHL1810013614 KJ958479 Stramenopiles Chaetoceros simplex (KJ958479) 30100 30173 + Trp CCA [ENA] ¡û
>CHL1810013666 KJ958482 Stramenopiles Rhizosolenia imbricata (KJ958482) 20766 20694 - Trp CCA [ENA] ¡û
>CHL1810013673 KJ958483 Stramenopiles Roundia cardiophora (KJ958483) 25037 25109 + Trp CCA [ENA] ¡û
>CHL1810013701 KJ958484 Stramenopiles Cerataulina daemon (KJ958484) 30659 30733 + Trp CCA [ENA] ¡û
>CHL1810013728 KJ958485 Stramenopiles Thalassiosira weissflogii (KJ958485) 24661 24735 + Trp CCA [ENA] ¡û
>CHL1810059245 MG755792 Stramenopiles Plagiogramma staurophorum (MG755792) 37933 38008 + Trp CCA [ENA] ¡û
>CHL1810059297 MG755794 Stramenopiles Plagiogrammopsis vanheurckii (MG755794) 28326 28398 + Trp CCA [ENA] ¡û
>CHL1810059328 MG755796 Stramenopiles Guinardia striata (MG755796) 40681 40755 + Trp CCA [ENA] ¡û
>CHL1810059358 MG755798 Stramenopiles Attheya longicornis (MG755798) 43334 43408 + Trp CCA [ENA] ¡û
>CHL1810059432 MG755801 Stramenopiles Triceratium dubium (MG755801) 27177 27249 + Trp CCA [ENA] ¡û
>CHL1810059485 MG755802 Stramenopiles Rhizosolenia fallax (MG755802) 21171 21099 - Trp CCA [ENA] ¡û
>CHL1810059520 MG755804 Stramenopiles Cyclotella pseudostelligera (MG755804) 24773 24847 + Trp CCA [ENA] ¡û
>CHL1810059628 MG755808 Stramenopiles Acanthoceras zachariasii (MG755808) 28866 28938 + Trp CCA [ENA] ¡û
>CHL090102741 EF067920 stramenopiles Phaeodactylum tricornutum 26877 26805 - Trp CCA [ENA] ¡û
>CHL090102750 EF067921 stramenopiles Thalassiosira pseudonana 24922 24995 + Trp CCA [ENA] ¡û
Identical group No.460408 (24 seq.)
>WENV180038596 LLBY010000546 [LLBY] soil metagenome; soil from tomato rhizosphere 44594 44666 + Trp CCA [ENA] ¢þ
>WENV180040788 LLBZ010014679 [LLBZ] soil metagenome; soil from tomato rhizosphere 2601 2529 - Trp CCA [ENA] ¢þ
>WENV180294575 OBIY01262694 [OBIY] beach sand metagenome; beach sand 109 37 - Trp CCA [ENA] ¢þ
>WENV180375331 OBOL01002602 [OBOL] marine metagenome; Surface water 478 405 - Trp CCA [ENA] ¢þ
>WENV180396240 OBPU01081546 [OBPU] marine metagenome; ENVO:00002010 213 139 - Trp CCA [ENA] ¢þ
>WENV180591217 OCOV01004045 [OCOV] marine metagenome; ENVO:01000301 727 801 + Trp CCA [ENA] ¢þ
>WENV180636122 OCRE01062771 [OCRE] marine metagenome; Seawater 221 147 - Trp CCA [ENA] ¢þ
>WENV181323258 OFKX01002116 [OFKX] marine metagenome; seawater 845 919 + Trp CCA [ENA] ¢þ
>WENV181416060 OGCL01046373 [OGCL] hot springs metagenome; Hot spring water 923 849 - Trp CCA [ENA] ¢þ
>WENV183620239 OOFR01017358 [OOFR] marine metagenome; seawater 650 576 - Trp CCA [ENA] ¢þ
>WENV170024463 BCQL01063562 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 396 321 - Trp CCA [ENA] ¢þ
>WENV170305111 CESI01112591 [CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 276 202 - Trp CCA [ENA] ¢þ
>WENV170306767 CESJ01067776 [CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1645 1573 - Trp CCA [ENA] ¢þ
>WENV170634782 JAHE01065231 [JAHE] sediment metagenome; lake sediment 330 402 + Trp CCA [ENA] ¢þ
>WENV170812767 MDSW01188985 [MDSW] marine metagenome; seawater 1474 1546 + Trp CCA [ENA] ¢þ
>WENV170827497 MDSY01130366 [MDSY] marine metagenome; seawater 6470 6544 + Trp CCA [ENA] ¢þ
>CHL1810002569 GU323224 Stramenopiles Thalassiosira oceanica CCMP1005 (GU323224) 7199 7273 + Trp CCA [ENA] ¡û
>CHL1810008324 KC509522 Stramenopiles Cylindrotheca closterium ccmp1855 (KC509522) 34022 34094 + Trp CCA [ENA] ¡û
>CHL1810008399 KC509524 Stramenopiles Leptocylindrus danicus ccmp1856 (KC509524) 17227 17153 - Trp CCA [ENA] ¡û
>CHL1810034290 KX619437 Stramenopiles Toxarium undulatum ECT3802 (KX619437) 25392 25318 - Trp CCA [ENA] ¡û
>CHL1810059402 MG755799 Stramenopiles Actinocyclus subtilis (MG755799) 20745 20671 - Trp CCA [ENA] ¡û
>CHL1810059567 MG755805 Stramenopiles Biddulphia biddulphiana (MG755805) 35489 35417 - Trp CCA [ENA] ¡û
>CHL1810059593 MG755806 Stramenopiles Biddulphia tridens (MG755806) 38723 38651 - Trp CCA [ENA] ¡û
>CHL090103367 Z67753 stramenopiles Odontella sinensis 92732 92660 - Trp CCA [ENA] ¡û
Identical group No.478844 (10 seq.)
>WENV170267458 CERG01004532 [CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2410 2482 + Trp CCA [ENA] ¢þ
>WENV170279490 CERR01026081 [CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 294 366 + Trp CCA [ENA] ¢þ
>WENV170281298 CERS01038191 [CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 296 368 + Trp CCA [ENA] ¢þ
>WENV170285545 CERV01253096 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3318 3246 - Trp CCA [ENA] ¢þ
>WENV170289785 CERX01265177 [CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 927 855 - Trp CCA [ENA] ¢þ
>WENV170399945 CEUE01059662 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 296 368 + Trp CCA [ENA] ¢þ
>WENV170515384 CEWB01020517 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 5871 5799 - Trp CCA [ENA] ¢þ
>WENV170797628 MDSV01183369 [MDSV] marine metagenome; seawater 2506 2578 + Trp CCA [ENA] ¢þ
>WENV170883404 MDTC01165829 [MDTC] marine metagenome; seawater 2932 3004 + Trp CCA [ENA] ¢þ
>CHL1810002178 GQ231541 Stramenopiles Aureococcus anophagefferens CCMP 1984 (GQ231541) 68531 68603 + Trp CCA [ENA] ¡û
Identical group No.480788 (1 seq.)
>CHL1810005436 JQ405663 Stramenopiles Saccharina japonica (JQ405663) 110141 110069 - Trp CCA [ENA] ¡û
Identical group No.480801 (2 seq.)
>CHL1810008407 KC509525 Stramenopiles Lithodesmium undulatum ccmp1797 (KC509525) 27612 27686 + Trp CCA [ENA] ¡û
>CHL1810010640 KF733443 Stramenopiles Eunotia naegelii utex FD354 (KF733443) 37321 37247 - Trp CCA [ENA] ¡û
Identical group No.480833 (2 seq.)
>WENV180365202 OBOB01034932 [OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER 75 3 - Trp CCA [ENA] ¢þ
>CHL1810019284 KR709240 Stramenopiles Pseudo-nitzschia multiseries (KR709240) 109209 109281 + Trp CCA [ENA] ¡û
Identical group No.504584 (1 seq.)
>CHL1810059621 MG755807 Stramenopiles Astrosyne radiata (MG755807) 18847 18775 - Trp CCA [ENA] ¡û
Identical group No.523547 (2 seq.)
>WENV170639220 JFJP01001701 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 11775 11702 - Trp CCA [ENA] ¢þ
>CHL1810000383 AP011960 Stramenopiles Fistulifera solaris JPCC DA0580 (AP011960) 14444 14518 + Trp CCA [ENA] ¡û
Identical group No.523558 (2 seq.)
>WENV180355001 OBNF01000057 [OBNF] marine metagenome; None 1019 947 - Trp CCA [ENA] ¢þ
>CHL1810001028 EU168190 Stramenopiles Heterosigma akashiwo NIES 293 (EU168190) 36794 36722 - Trp CCA [ENA] ¡û
Identical group No.536360 (2 seq.)
>CHL1810001456 EU912438 Stramenopiles Vaucheria litorea (EU912438) 38268 38340 + Trp CCA [ENA] ¡û
>CHL1810008689 KC598089 Stramenopiles Nannochloropsis limnetica CCMP505 (KC598089) 6568 6641 + Trp CCA [ENA] ¡û
Identical group No.536427 (1 seq.)
>CHL1810024310 KU164871 Stramenopiles Pleurocladia lacustris Sa2 (KU164871) 110022 109950 - Trp CCA [ENA] ¡û
Identical group No.561472 (1 seq.)
>CHL1810002150 FP102296 Stramenopiles Ectocarpus siliculosus (FP102296) 28921 28993 + Trp CCA [ENA] ¡û
Identical group No.561481 (5 seq.)
>CHL1810006651 KC012944 Stramenopiles Nannochloropsis gaditana 3B (KC012944) 9097 9169 + Trp CCA [ENA] ¡û
>CHL1810008615 KC598085 Stramenopiles Nannochloropsis granulata (KC598085) 6547 6620 + Trp CCA [ENA] ¡û
>CHL1810008640 KC598087 Stramenopiles Nannochloropsis oculata CCMP525 (KC598087) 6544 6617 + Trp CCA [ENA] ¡û
>CHL1810008665 KC598088 Stramenopiles Nannochloropsis salina CCMP537 (KC598088) 6574 6646 + Trp CCA [ENA] ¡û
>CHL1810008714 KC598090 Stramenopiles Nannochloropsis oceanica CCMP531 (KC598090) 6543 6615 + Trp CCA [ENA] ¡û
Identical group No.581947 (1 seq.)
>CHL1810017337 KP298002 Stramenopiles Undaria pinnatifida (KP298002) 109963 109891 - Trp CCA [ENA] ¡û
Identical group No.592286 (1 seq.)
>CHL1810059425 MG755800 Stramenopiles Entomoneis sp. (MG755800) 26842 26768 - Trp CCA [ENA] ¡û
Identical group No.601848 (1 seq.)
>CHL1810019016 KR336545 Stramenopiles Costaria costata (KR336545) 109885 109813 - Trp CCA [ENA] ¡û
Identical group No.601896 (1 seq.)
>CHL1810059292 MG755793 Stramenopiles Rhizosolenia setigera (MG755793) 21050 20976 - Trp CCA [ENA] ¡û
Identical group No.611231 (2 seq.)
>CHL1810002035 FM957154 Stramenopiles Fucus vesiculosus (FM957154) 102482 102554 + Trp CCA [ENA] ¡û
>CHL1861001719 KP881334 Stramenopiles Sargassum horneri (KP881334) 101540 101702 + Trp CCA [ENA] ¡û
Identical group No.611237 (1 seq.)
>CHL1810002214 GQ231542 Stramenopiles Aureoumbra lagunensis CCMP 1507 (GQ231542) 60764 60692 - Trp CCA [ENA] ¡û
Identical group No.611252 (1 seq.)
>CHL1810008319 KC509521 Stramenopiles Coscinodiscus radiatus ccmp310 (KC509521) 20802 20728 - Trp CCA [ENA] ¡û
Identical group No.622701 (2 seq.)
>WENV180081000 MPMC02074181 [MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter 270 344 + Trp CCA [ENA] ¢þ
>CHL1810059496 MG755803 Stramenopiles Psammoneis obaidii (MG755803) 47610 47684 + Trp CCA [ENA] ¡û
Identical group No.627317 (1 seq.)
>CHL1810042846 KY433579 Stramenopiles Dictyopteris divaricata (KY433579) 107039 106965 - Trp CCA [ENA] ¡û
Identical group No.652661 (1 seq.)
>CHL1810008285 KC509520 Stramenopiles Asterionellopsis glacialis ccmp1717 (KC509520) 35553 35479 - Trp CCA [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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