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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stramenopiles
Anticodon = GCT
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13275 (3 seq.)
>CHL1810005441
JQ405663
Stramenopiles
Saccharina japonica (JQ405663)
38259
38170
-
Ser
GCT
[ENA]
¡û
>CHL1810017342
KP298002
Stramenopiles
Undaria pinnatifida (KP298002)
38347
38258
-
Ser
GCT
[ENA]
¡û
>CHL1810019021
KR336545
Stramenopiles
Costaria costata (KR336545)
38489
38400
-
Ser
GCT
[ENA]
¡û
Identical group No.15371 (1 seq.)
>CHL1810024312
KU164871
Stramenopiles
Pleurocladia lacustris Sa2 (KU164871)
66050
65960
-
Ser
GCT
[ENA]
¡û
Identical group No.16254 (1 seq.)
>CHL1810002152
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
72267
72357
+
Ser
GCT
[ENA]
¡û
Identical group No.22424 (1 seq.)
>CHL1810008346
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
2741
2650
-
Ser
GCT
[ENA]
¡û
Identical group No.24058 (1 seq.)
>CHL1810001472
EU912438
Stramenopiles
Vaucheria litorea (EU912438)
73678
73589
-
Ser
GCT
[ENA]
¡û
Identical group No.25380 (4 seq.)
>CHL1810008616
KC598085
Stramenopiles
Nannochloropsis granulata (KC598085)
10901
10989
+
Ser
GCT
[ENA]
¡û
>CHL1810008641
KC598087
Stramenopiles
Nannochloropsis oculata CCMP525 (KC598087)
10898
10986
+
Ser
GCT
[ENA]
¡û
>CHL1810008690
KC598089
Stramenopiles
Nannochloropsis limnetica CCMP505 (KC598089)
10920
11008
+
Ser
GCT
[ENA]
¡û
>CHL1810008715
KC598090
Stramenopiles
Nannochloropsis oceanica CCMP531 (KC598090)
10897
10985
+
Ser
GCT
[ENA]
¡û
Identical group No.27507 (2 seq.)
>CHL1810006652
KC012944
Stramenopiles
Nannochloropsis gaditana 3B (KC012944)
13446
13534
+
Ser
GCT
[ENA]
¡û
>CHL1810008666
KC598088
Stramenopiles
Nannochloropsis salina CCMP537 (KC598088)
10923
11011
+
Ser
GCT
[ENA]
¡û
Identical group No.28003 (1 seq.)
>CHL1810002026
FM957154
Stramenopiles
Fucus vesiculosus (FM957154)
15189
15279
+
Ser
GCT
[ENA]
¡û
Identical group No.28889 (1 seq.)
>CHL1810042851
KY433579
Stramenopiles
Dictyopteris divaricata (KY433579)
38854
38766
-
Ser
GCT
[ENA]
¡û
Identical group No.29932 (1 seq.)
>CHL1810018127
KP881334
Stramenopiles
Sargassum horneri (KP881334)
14944
15032
+
Ser
GCT
[ENA]
¡û
Identical group No.42534 (1 seq.)
>CHL1810002208
GQ231542
Stramenopiles
Aureoumbra lagunensis CCMP 1507 (GQ231542)
87318
87405
+
Ser
GCT
[ENA]
¡û
Identical group No.46737 (5 seq.)
>WENV170326866
CESU01027013
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3264
3178
-
Ser
GCT
[ENA]
¢þ
>WENV170824473
MDSY01076720
[MDSY] marine metagenome; seawater
3194
3108
-
Ser
GCT
[ENA]
¢þ
>WENV170828135
MDSY01143613
[MDSY] marine metagenome; seawater
232
146
-
Ser
GCT
[ENA]
¢þ
>CHL1810000600
AP014625
Stramenopiles
Triparma laevis (AP014625)
41190
41276
+
Ser
GCT
[ENA]
¡û
>CHL1810059482
MG755802
Stramenopiles
Rhizosolenia fallax (MG755802)
55508
55420
-
Ser
GCT
[ENA]
¡û
Identical group No.47731 (7 seq.)
>WENV180103755
OAPB01004037
[OAPB] marine metagenome; Sterile flask
861
773
-
Ser
GCT
[ENA]
¢þ
>WENV180387612
OBPF01022147
[OBPF] marine metagenome; Sterile flask
165
77
-
Ser
GCT
[ENA]
¢þ
>WENV180388200
OBPG01084462
[OBPG] marine metagenome; Sterile flask
194
282
+
Ser
GCT
[ENA]
¢þ
>WENV180388782
OBPH01101052
[OBPH] marine metagenome; Sterile flask
157
245
+
Ser
GCT
[ENA]
¢þ
>WENV180390078
OBPK01021790
[OBPK] marine metagenome; Sterile flask
585
497
-
Ser
GCT
[ENA]
¢þ
>WENV180589543
OCOS01000010
[OCOS] marine metagenome; Sterile flask
6586
6674
+
Ser
GCT
[ENA]
¢þ
>CHL1810013663
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
54481
54393
-
Ser
GCT
[ENA]
¡û
Identical group No.49123 (2 seq.)
>WENV180100681
OAOS01005566
[OAOS] marine metagenome; ENVO.00002110
461
373
-
Ser
GCT
[ENA]
¢þ
>CHL1810008396
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
57777
57689
-
Ser
GCT
[ENA]
¡û
Identical group No.49127 (9 seq.)
>WENV180082214
MPMC02196916
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
335
247
-
Ser
GCT
[ENA]
¢þ
>WENV183617620
OOEG01020951
[OOEG] marine metagenome; sea ice
121
33
-
Ser
GCT
[ENA]
¢þ
>WENV183627983
OOGM01000206
[OOGM] marine metagenome; sea ice
337
425
+
Ser
GCT
[ENA]
¢þ
>CHL1810002631
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
17496
17585
+
Ser
GCT
[ENA]
¡û
>CHL1810005294
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
17192
17278
+
Ser
GCT
[ENA]
¡û
>CHL1810008290
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
11278
11190
-
Ser
GCT
[ENA]
¡û
>CHL1810008410
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
49063
49151
+
Ser
GCT
[ENA]
¡û
>CHL1810010620
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
28162
28250
+
Ser
GCT
[ENA]
¡û
>CHL1810059242
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
7819
7907
+
Ser
GCT
[ENA]
¡û
Identical group No.49137 (4 seq.)
>WENV180110347
OAPM01019912
[OAPM] marine metagenome; ENVO.00002110
347
259
-
Ser
GCT
[ENA]
¢þ
>WENV180381638
OBOS01006118
[OBOS] marine metagenome; ENVO 00002150
190
278
+
Ser
GCT
[ENA]
¢þ
>WENV180396727
OBPV01072980
[OBPV] marine metagenome; ENVO:00002010
303
215
-
Ser
GCT
[ENA]
¢þ
>CHL1810019287
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
106887
106799
-
Ser
GCT
[ENA]
¡û
Identical group No.52386 (16 seq.)
>WENV181415510
OGCL01012784
[OGCL] hot springs metagenome; Hot spring water
668
756
+
Ser
GCT
[ENA]
¢þ
>WENV183060469
OLHX01018362
[OLHX] seawater metagenome; Sea water
494
406
-
Ser
GCT
[ENA]
¢þ
>WENV183620749
OOFS01027759
[OOFS] marine metagenome; sea ice
467
379
-
Ser
GCT
[ENA]
¢þ
>WENV183621850
OOFV01000106
[OOFV] marine metagenome; seawater
3252
3340
+
Ser
GCT
[ENA]
¢þ
>WENV170017327
BART01015174
[BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula
845
757
-
Ser
GCT
[ENA]
¢þ
>WENV170601394
FUWD010170936
[FUWD] metagenome; unknown
609
521
-
Ser
GCT
[ENA]
¢þ
>WENV170603766
FUWD010333457
[FUWD] metagenome; unknown
112
200
+
Ser
GCT
[ENA]
¢þ
>WENV170639243
JFJP01001704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3462
3374
-
Ser
GCT
[ENA]
¢þ
>WENV170785779
MDSP01370928
[MDSP] gut metagenome; Stomach gut content
456
370
-
Ser
GCT
[ENA]
¢þ
>WENV170817007
MDSX01041960
[MDSX] marine metagenome; seawater
4682
4770
+
Ser
GCT
[ENA]
¢þ
>CHL1810013675
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
49227
49314
+
Ser
GCT
[ENA]
¡û
>CHL1810013723
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
5261
5173
-
Ser
GCT
[ENA]
¡û
>CHL1810013730
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
49181
49270
+
Ser
GCT
[ENA]
¡û
>CHL1810059385
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
43922
44008
+
Ser
GCT
[ENA]
¡û
>CHL1810059631
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
57369
57457
+
Ser
GCT
[ENA]
¡û
>CHL090102723
EF067920
stramenopiles
Phaeodactylum tricornutum
17793
17881
+
Ser
GCT
[ENA]
¡û
Identical group No.52402 (1 seq.)
>CHL1810059600
MG755807
Stramenopiles
Astrosyne radiata (MG755807)
9890
9978
+
Ser
GCT
[ENA]
¡û
Identical group No.54723 (1 seq.)
>CHL1810000398
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
115212
115300
+
Ser
GCT
[ENA]
¡û
Identical group No.54728 (2 seq.)
>WENV180355000
OBNF01000057
[OBNF] marine metagenome; None
1240
1154
-
Ser
GCT
[ENA]
¢þ
>CHL1810001027
EU168190
Stramenopiles
Heterosigma akashiwo NIES 293 (EU168190)
37015
36929
-
Ser
GCT
[ENA]
¡û
Identical group No.55711 (3 seq.)
>WENV180359388
OBNR01066555
[OBNR] marine metagenome; Seawater_00002010_00002149
376
288
-
Ser
GCT
[ENA]
¢þ
>WENV170535821
CEWP01110274
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
277
366
+
Ser
GCT
[ENA]
¢þ
>CHL1810059493
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
35812
35900
+
Ser
GCT
[ENA]
¡û
Identical group No.56419 (3 seq.)
>WENV180275160
OBHS01029045
[OBHS] metagenome; freshwater sediment
110
198
+
Ser
GCT
[ENA]
¢þ
>CHL1810008352
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
17744
17833
+
Ser
GCT
[ENA]
¡û
>ENV09000025
ABSN01001437
Freshwater sediment metagenome lwFormaldehyde_C1
563
477
-
Ser
GCT
[ENA]
¡û
Identical group No.57724 (2 seq.)
>WENV183622877
OOFW01032080
[OOFW] marine metagenome; sea ice
492
404
-
Ser
GCT
[ENA]
¢þ
>CHL1810002591
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
42245
42157
-
Ser
GCT
[ENA]
¡û
Identical group No.58795 (3 seq.)
>WENV170796956
MDSV01172341
[MDSV] marine metagenome; seawater
2489
2403
-
Ser
GCT
[ENA]
¢þ
>WENV170851798
MDTA01137910
[MDTA] marine metagenome; seawater
1845
1759
-
Ser
GCT
[ENA]
¢þ
>CHL1810002195
GQ231541
Stramenopiles
Aureococcus anophagefferens CCMP 1984 (GQ231541)
6549
6463
-
Ser
GCT
[ENA]
¡û
Identical group No.63499 (5 seq.)
>WENV180038594
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
33023
33111
+
Ser
GCT
[ENA]
¢þ
>WENV180040786
LLBZ010014679
[LLBZ] soil metagenome; soil from tomato rhizosphere
14162
14074
-
Ser
GCT
[ENA]
¢þ
>WENV180310234
OBJS01353513
[OBJS] beach sand metagenome; beach sand
111
23
-
Ser
GCT
[ENA]
¢þ
>WENV170639255
JFJP01001711
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3019
2931
-
Ser
GCT
[ENA]
¢þ
>CHL1810059408
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
17603
17691
+
Ser
GCT
[ENA]
¡û
Identical group No.65246 (1 seq.)
>CHL1810059275
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
43399
43485
+
Ser
GCT
[ENA]
¡û
Identical group No.66617 (1 seq.)
>CHL1810008302
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
45228
45318
+
Ser
GCT
[ENA]
¡û
Identical group No.67633 (3 seq.)
>WENV180109237
OAPJ01040932
[OAPJ] marine metagenome; ENVO 00002150
214
126
-
Ser
GCT
[ENA]
¢þ
>WENV180365014
OBOB01003039
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
72
160
+
Ser
GCT
[ENA]
¢þ
>CHL1810013618
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
56538
56626
+
Ser
GCT
[ENA]
¡û
Identical group No.67646 (1 seq.)
>CHL1810059576
MG755806
Stramenopiles
Biddulphia tridens (MG755806)
18956
19044
+
Ser
GCT
[ENA]
¡û
Identical group No.68713 (1 seq.)
>CHL1810034270
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
47616
47704
+
Ser
GCT
[ENA]
¡û
Identical group No.68717 (2 seq.)
>CHL1810059354
MG755798
Stramenopiles
Attheya longicornis (MG755798)
22206
22294
+
Ser
GCT
[ENA]
¡û
>CHL1810059522
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
49410
49498
+
Ser
GCT
[ENA]
¡û
Identical group No.72567 (1 seq.)
>CHL1810059549
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
17432
17520
+
Ser
GCT
[ENA]
¡û
Identical group No.77486 (4 seq.)
>WENV180376554
OBOM01026774
[OBOM] marine metagenome; Seawater
427
514
+
Ser
GCT
[ENA]
¢þ
>WENV170813807
MDSW01206453
[MDSW] marine metagenome; seawater
114
201
+
Ser
GCT
[ENA]
¢þ
>CHL1810059299
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
50533
50620
+
Ser
GCT
[ENA]
¡û
>CHL1810059435
MG755801
Stramenopiles
Triceratium dubium (MG755801)
54327
54414
+
Ser
GCT
[ENA]
¡û
Identical group No.84777 (2 seq.)
>WENV180394896
OBPS01157744
[OBPS] marine metagenome; ENVO:00002010 seawater
197
284
+
Ser
GCT
[ENA]
¢þ
>CHL1810059324
MG755796
Stramenopiles
Guinardia striata (MG755796)
6593
6680
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK