tRNA genes clustered and arranged according to each identical group

Stramenopiles

Anticodon = GCT

HIT: 34 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.13275 (3 seq.)
>CHL1810005441 JQ405663 Stramenopiles Saccharina japonica (JQ405663) 38259 38170 - Ser GCT [ENA] ¡û
>CHL1810017342 KP298002 Stramenopiles Undaria pinnatifida (KP298002) 38347 38258 - Ser GCT [ENA] ¡û
>CHL1810019021 KR336545 Stramenopiles Costaria costata (KR336545) 38489 38400 - Ser GCT [ENA] ¡û
Identical group No.15371 (1 seq.)
>CHL1810024312 KU164871 Stramenopiles Pleurocladia lacustris Sa2 (KU164871) 66050 65960 - Ser GCT [ENA] ¡û
Identical group No.16254 (1 seq.)
>CHL1810002152 FP102296 Stramenopiles Ectocarpus siliculosus (FP102296) 72267 72357 + Ser GCT [ENA] ¡û
Identical group No.22424 (1 seq.)
>CHL1810008346 KC509522 Stramenopiles Cylindrotheca closterium ccmp1855 (KC509522) 2741 2650 - Ser GCT [ENA] ¡û
Identical group No.24058 (1 seq.)
>CHL1810001472 EU912438 Stramenopiles Vaucheria litorea (EU912438) 73678 73589 - Ser GCT [ENA] ¡û
Identical group No.25380 (4 seq.)
>CHL1810008616 KC598085 Stramenopiles Nannochloropsis granulata (KC598085) 10901 10989 + Ser GCT [ENA] ¡û
>CHL1810008641 KC598087 Stramenopiles Nannochloropsis oculata CCMP525 (KC598087) 10898 10986 + Ser GCT [ENA] ¡û
>CHL1810008690 KC598089 Stramenopiles Nannochloropsis limnetica CCMP505 (KC598089) 10920 11008 + Ser GCT [ENA] ¡û
>CHL1810008715 KC598090 Stramenopiles Nannochloropsis oceanica CCMP531 (KC598090) 10897 10985 + Ser GCT [ENA] ¡û
Identical group No.27507 (2 seq.)
>CHL1810006652 KC012944 Stramenopiles Nannochloropsis gaditana 3B (KC012944) 13446 13534 + Ser GCT [ENA] ¡û
>CHL1810008666 KC598088 Stramenopiles Nannochloropsis salina CCMP537 (KC598088) 10923 11011 + Ser GCT [ENA] ¡û
Identical group No.28003 (1 seq.)
>CHL1810002026 FM957154 Stramenopiles Fucus vesiculosus (FM957154) 15189 15279 + Ser GCT [ENA] ¡û
Identical group No.28889 (1 seq.)
>CHL1810042851 KY433579 Stramenopiles Dictyopteris divaricata (KY433579) 38854 38766 - Ser GCT [ENA] ¡û
Identical group No.29932 (1 seq.)
>CHL1810018127 KP881334 Stramenopiles Sargassum horneri (KP881334) 14944 15032 + Ser GCT [ENA] ¡û
Identical group No.42534 (1 seq.)
>CHL1810002208 GQ231542 Stramenopiles Aureoumbra lagunensis CCMP 1507 (GQ231542) 87318 87405 + Ser GCT [ENA] ¡û
Identical group No.46737 (5 seq.)
>WENV170326866 CESU01027013 [CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 3264 3178 - Ser GCT [ENA] ¢þ
>WENV170824473 MDSY01076720 [MDSY] marine metagenome; seawater 3194 3108 - Ser GCT [ENA] ¢þ
>WENV170828135 MDSY01143613 [MDSY] marine metagenome; seawater 232 146 - Ser GCT [ENA] ¢þ
>CHL1810000600 AP014625 Stramenopiles Triparma laevis (AP014625) 41190 41276 + Ser GCT [ENA] ¡û
>CHL1810059482 MG755802 Stramenopiles Rhizosolenia fallax (MG755802) 55508 55420 - Ser GCT [ENA] ¡û
Identical group No.47731 (7 seq.)
>WENV180103755 OAPB01004037 [OAPB] marine metagenome; Sterile flask 861 773 - Ser GCT [ENA] ¢þ
>WENV180387612 OBPF01022147 [OBPF] marine metagenome; Sterile flask 165 77 - Ser GCT [ENA] ¢þ
>WENV180388200 OBPG01084462 [OBPG] marine metagenome; Sterile flask 194 282 + Ser GCT [ENA] ¢þ
>WENV180388782 OBPH01101052 [OBPH] marine metagenome; Sterile flask 157 245 + Ser GCT [ENA] ¢þ
>WENV180390078 OBPK01021790 [OBPK] marine metagenome; Sterile flask 585 497 - Ser GCT [ENA] ¢þ
>WENV180589543 OCOS01000010 [OCOS] marine metagenome; Sterile flask 6586 6674 + Ser GCT [ENA] ¢þ
>CHL1810013663 KJ958482 Stramenopiles Rhizosolenia imbricata (KJ958482) 54481 54393 - Ser GCT [ENA] ¡û
Identical group No.49123 (2 seq.)
>WENV180100681 OAOS01005566 [OAOS] marine metagenome; ENVO.00002110 461 373 - Ser GCT [ENA] ¢þ
>CHL1810008396 KC509524 Stramenopiles Leptocylindrus danicus ccmp1856 (KC509524) 57777 57689 - Ser GCT [ENA] ¡û
Identical group No.49127 (9 seq.)
>WENV180082214 MPMC02196916 [MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter 335 247 - Ser GCT [ENA] ¢þ
>WENV183617620 OOEG01020951 [OOEG] marine metagenome; sea ice 121 33 - Ser GCT [ENA] ¢þ
>WENV183627983 OOGM01000206 [OOGM] marine metagenome; sea ice 337 425 + Ser GCT [ENA] ¢þ
>CHL1810002631 GU591327 Alveolata Durinskia baltica CS-38 (GU591327) 17496 17585 + Ser GCT [ENA] ¡û
>CHL1810005294 JQ088178 Stramenopiles Ulnaria acus (JQ088178) 17192 17278 + Ser GCT [ENA] ¡û
>CHL1810008290 KC509520 Stramenopiles Asterionellopsis glacialis ccmp1717 (KC509520) 11278 11190 - Ser GCT [ENA] ¡û
>CHL1810008410 KC509525 Stramenopiles Lithodesmium undulatum ccmp1797 (KC509525) 49063 49151 + Ser GCT [ENA] ¡û
>CHL1810010620 KF733443 Stramenopiles Eunotia naegelii utex FD354 (KF733443) 28162 28250 + Ser GCT [ENA] ¡û
>CHL1810059242 MG755792 Stramenopiles Plagiogramma staurophorum (MG755792) 7819 7907 + Ser GCT [ENA] ¡û
Identical group No.49137 (4 seq.)
>WENV180110347 OAPM01019912 [OAPM] marine metagenome; ENVO.00002110 347 259 - Ser GCT [ENA] ¢þ
>WENV180381638 OBOS01006118 [OBOS] marine metagenome; ENVO 00002150 190 278 + Ser GCT [ENA] ¢þ
>WENV180396727 OBPV01072980 [OBPV] marine metagenome; ENVO:00002010 303 215 - Ser GCT [ENA] ¢þ
>CHL1810019287 KR709240 Stramenopiles Pseudo-nitzschia multiseries (KR709240) 106887 106799 - Ser GCT [ENA] ¡û
Identical group No.52386 (16 seq.)
>WENV181415510 OGCL01012784 [OGCL] hot springs metagenome; Hot spring water 668 756 + Ser GCT [ENA] ¢þ
>WENV183060469 OLHX01018362 [OLHX] seawater metagenome; Sea water 494 406 - Ser GCT [ENA] ¢þ
>WENV183620749 OOFS01027759 [OOFS] marine metagenome; sea ice 467 379 - Ser GCT [ENA] ¢þ
>WENV183621850 OOFV01000106 [OOFV] marine metagenome; seawater 3252 3340 + Ser GCT [ENA] ¢þ
>WENV170017327 BART01015174 [BART] marine sediment metagenome; marine subsurface sediment at 5.1 meters below seafloor (mbsf), off the Shimokita Peninsula 845 757 - Ser GCT [ENA] ¢þ
>WENV170601394 FUWD010170936 [FUWD] metagenome; unknown 609 521 - Ser GCT [ENA] ¢þ
>WENV170603766 FUWD010333457 [FUWD] metagenome; unknown 112 200 + Ser GCT [ENA] ¢þ
>WENV170639243 JFJP01001704 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 3462 3374 - Ser GCT [ENA] ¢þ
>WENV170785779 MDSP01370928 [MDSP] gut metagenome; Stomach gut content 456 370 - Ser GCT [ENA] ¢þ
>WENV170817007 MDSX01041960 [MDSX] marine metagenome; seawater 4682 4770 + Ser GCT [ENA] ¢þ
>CHL1810013675 KJ958483 Stramenopiles Roundia cardiophora (KJ958483) 49227 49314 + Ser GCT [ENA] ¡û
>CHL1810013723 KJ958484 Stramenopiles Cerataulina daemon (KJ958484) 5261 5173 - Ser GCT [ENA] ¡û
>CHL1810013730 KJ958485 Stramenopiles Thalassiosira weissflogii (KJ958485) 49181 49270 + Ser GCT [ENA] ¡û
>CHL1810059385 MG755799 Stramenopiles Actinocyclus subtilis (MG755799) 43922 44008 + Ser GCT [ENA] ¡û
>CHL1810059631 MG755808 Stramenopiles Acanthoceras zachariasii (MG755808) 57369 57457 + Ser GCT [ENA] ¡û
>CHL090102723 EF067920 stramenopiles Phaeodactylum tricornutum 17793 17881 + Ser GCT [ENA] ¡û
Identical group No.52402 (1 seq.)
>CHL1810059600 MG755807 Stramenopiles Astrosyne radiata (MG755807) 9890 9978 + Ser GCT [ENA] ¡û
Identical group No.54723 (1 seq.)
>CHL1810000398 AP011960 Stramenopiles Fistulifera solaris JPCC DA0580 (AP011960) 115212 115300 + Ser GCT [ENA] ¡û
Identical group No.54728 (2 seq.)
>WENV180355000 OBNF01000057 [OBNF] marine metagenome; None 1240 1154 - Ser GCT [ENA] ¢þ
>CHL1810001027 EU168190 Stramenopiles Heterosigma akashiwo NIES 293 (EU168190) 37015 36929 - Ser GCT [ENA] ¡û
Identical group No.55711 (3 seq.)
>WENV180359388 OBNR01066555 [OBNR] marine metagenome; Seawater_00002010_00002149 376 288 - Ser GCT [ENA] ¢þ
>WENV170535821 CEWP01110274 [CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 277 366 + Ser GCT [ENA] ¢þ
>CHL1810059493 MG755803 Stramenopiles Psammoneis obaidii (MG755803) 35812 35900 + Ser GCT [ENA] ¡û
Identical group No.56419 (3 seq.)
>WENV180275160 OBHS01029045 [OBHS] metagenome; freshwater sediment 110 198 + Ser GCT [ENA] ¢þ
>CHL1810008352 KC509523 Stramenopiles Didymosphenia geminata BCC011 (KC509523) 17744 17833 + Ser GCT [ENA] ¡û
>ENV09000025 ABSN01001437 Freshwater sediment metagenome lwFormaldehyde_C1 563 477 - Ser GCT [ENA] ¡û
Identical group No.57724 (2 seq.)
>WENV183622877 OOFW01032080 [OOFW] marine metagenome; sea ice 492 404 - Ser GCT [ENA] ¢þ
>CHL1810002591 GU323224 Stramenopiles Thalassiosira oceanica CCMP1005 (GU323224) 42245 42157 - Ser GCT [ENA] ¡û
Identical group No.58795 (3 seq.)
>WENV170796956 MDSV01172341 [MDSV] marine metagenome; seawater 2489 2403 - Ser GCT [ENA] ¢þ
>WENV170851798 MDTA01137910 [MDTA] marine metagenome; seawater 1845 1759 - Ser GCT [ENA] ¢þ
>CHL1810002195 GQ231541 Stramenopiles Aureococcus anophagefferens CCMP 1984 (GQ231541) 6549 6463 - Ser GCT [ENA] ¡û
Identical group No.63499 (5 seq.)
>WENV180038594 LLBY010000546 [LLBY] soil metagenome; soil from tomato rhizosphere 33023 33111 + Ser GCT [ENA] ¢þ
>WENV180040786 LLBZ010014679 [LLBZ] soil metagenome; soil from tomato rhizosphere 14162 14074 - Ser GCT [ENA] ¢þ
>WENV180310234 OBJS01353513 [OBJS] beach sand metagenome; beach sand 111 23 - Ser GCT [ENA] ¢þ
>WENV170639255 JFJP01001711 [JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink 3019 2931 - Ser GCT [ENA] ¢þ
>CHL1810059408 MG755800 Stramenopiles Entomoneis sp. (MG755800) 17603 17691 + Ser GCT [ENA] ¡û
Identical group No.65246 (1 seq.)
>CHL1810059275 MG755793 Stramenopiles Rhizosolenia setigera (MG755793) 43399 43485 + Ser GCT [ENA] ¡û
Identical group No.66617 (1 seq.)
>CHL1810008302 KC509521 Stramenopiles Coscinodiscus radiatus ccmp310 (KC509521) 45228 45318 + Ser GCT [ENA] ¡û
Identical group No.67633 (3 seq.)
>WENV180109237 OAPJ01040932 [OAPJ] marine metagenome; ENVO 00002150 214 126 - Ser GCT [ENA] ¢þ
>WENV180365014 OBOB01003039 [OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER 72 160 + Ser GCT [ENA] ¢þ
>CHL1810013618 KJ958479 Stramenopiles Chaetoceros simplex (KJ958479) 56538 56626 + Ser GCT [ENA] ¡û
Identical group No.67646 (1 seq.)
>CHL1810059576 MG755806 Stramenopiles Biddulphia tridens (MG755806) 18956 19044 + Ser GCT [ENA] ¡û
Identical group No.68713 (1 seq.)
>CHL1810034270 KX619437 Stramenopiles Toxarium undulatum ECT3802 (KX619437) 47616 47704 + Ser GCT [ENA] ¡û
Identical group No.68717 (2 seq.)
>CHL1810059354 MG755798 Stramenopiles Attheya longicornis (MG755798) 22206 22294 + Ser GCT [ENA] ¡û
>CHL1810059522 MG755804 Stramenopiles Cyclotella pseudostelligera (MG755804) 49410 49498 + Ser GCT [ENA] ¡û
Identical group No.72567 (1 seq.)
>CHL1810059549 MG755805 Stramenopiles Biddulphia biddulphiana (MG755805) 17432 17520 + Ser GCT [ENA] ¡û
Identical group No.77486 (4 seq.)
>WENV180376554 OBOM01026774 [OBOM] marine metagenome; Seawater 427 514 + Ser GCT [ENA] ¢þ
>WENV170813807 MDSW01206453 [MDSW] marine metagenome; seawater 114 201 + Ser GCT [ENA] ¢þ
>CHL1810059299 MG755794 Stramenopiles Plagiogrammopsis vanheurckii (MG755794) 50533 50620 + Ser GCT [ENA] ¡û
>CHL1810059435 MG755801 Stramenopiles Triceratium dubium (MG755801) 54327 54414 + Ser GCT [ENA] ¡û
Identical group No.84777 (2 seq.)
>WENV180394896 OBPS01157744 [OBPS] marine metagenome; ENVO:00002010 seawater 197 284 + Ser GCT [ENA] ¢þ
>CHL1810059324 MG755796 Stramenopiles Guinardia striata (MG755796) 6593 6680 + Ser GCT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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