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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stramenopiles
Anticodon = TTC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455469 (29 seq.)
>CHL1830000130
GQ231541
Stramenopiles
Aureococcus anophagefferens CCMP 1984 (GQ231541)
8569
8497
-
Glu
TTC
[ENA]
¡û
>C153000101
CP003284
Cyanobacteriota
Anabaena sp. 90 [CP003284, CP003285]
948088
948016
-
Glu
TTC
[Ensembl]
¡û
>C153001138
CP011456
Cyanobacteriota
Anabaena sp. WA102 [CP011456]
5130271
5130196
-
Glu
TTC
-
¡û
>C133000127
CP003610
Cyanobacteriota
Calothrix sp. PCC 6303 [CP003610]
6248695
6248623
-
Glu
TTC
[Ensembl]
¡û
>W1630011923
LJOP01000027
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
4648
4720
+
Glu
TTC
[ENA]
¡û
>W1630011924
LJOQ01000058
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
80680
80608
-
Glu
TTC
[ENA]
¡û
>W1630011927
LJOS01000053
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
17655
17583
-
Glu
TTC
[ENA]
¡û
>W1630011928
LJOT01000069
Cyanobacteriota
Anabaena sp. CRKS33 [LJOT]
5217
5289
+
Glu
TTC
[ENA]
¡û
>W1630011929
LJOU01000150
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
9031
8956
-
Glu
TTC
[ENA]
¡û
>W1630011930
LJOV01000177
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
2002
2074
+
Glu
TTC
[ENA]
¡û
>W1630011932
LJOW01000092
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6786
6858
+
Glu
TTC
[ENA]
¡û
>W1630011934
LJOX01000029
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
13269
13197
-
Glu
TTC
[ENA]
¡û
>W1630011935
LJOY01000034
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
35943
36015
+
Glu
TTC
[ENA]
¡û
>W1630013593
LMTZ01000148
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
36712
36640
-
Glu
TTC
[ENA]
¡û
>W1630013594
LMTZ01000149
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
36741
36669
-
Glu
TTC
[ENA]
¡û
>W1630017877
LTEC01000011
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
46608
46680
+
Glu
TTC
[ENA]
¡û
>W1730014367
LJOP01000027
Cyanobacteriota
Anabaena sp. LE011-02 39865 [LJOP]
4648
4720
+
Glu
TTC
[ENA]
¡û
>W1730014368
LJOQ01000058
Cyanobacteriota
Anabaena sp. AL09 39864 [LJOQ]
80680
80608
-
Glu
TTC
[ENA]
¡û
>W1730014369
LJOS01000053
Cyanobacteriota
Anabaena sp. WA113 [LJOS]
17655
17583
-
Glu
TTC
[ENA]
¡û
>W1730014370
LJOU01000150
Cyanobacteriota
Anabaena sp. AL93 WA93 [LJOU]
9031
8956
-
Glu
TTC
[ENA]
¡û
>W1730014371
LJOV01000177
Cyanobacteriota
Anabaena sp. MDT14b [LJOV]
2002
2074
+
Glu
TTC
[ENA]
¡û
>W1730014373
LJOW01000092
Cyanobacteriota
Aphanizomenon flos-aquae WA102 [LJOW]
6786
6858
+
Glu
TTC
[ENA]
¡û
>W1730014375
LJOX01000029
Cyanobacteriota
Aphanizomenon flos-aquae MDT14a [LJOX]
13269
13197
-
Glu
TTC
[ENA]
¡û
>W1730014376
LJOY01000034
Cyanobacteriota
Aphanizomenon flos-aquae MDT13 [LJOY]
35943
36015
+
Glu
TTC
[ENA]
¡û
>W1730016026
LMTZ01000148
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
36712
36640
-
Glu
TTC
[ENA]
¡û
>W1730016027
LMTZ01000149
Cyanobacteriota
Mastigocoleus testarum BC008 [LMTZ]
36741
36669
-
Glu
TTC
[ENA]
¡û
>W1730020571
LTEC01000011
Cyanobacteriota
Aphanizomenon flos-aquae UKL13-PB [LTEC]
46608
46680
+
Glu
TTC
[ENA]
¡û
>W133002376
APIY01000054
Cyanobacteriota
Dolichospermum circinale AWQC131C [APIY]
16329
16401
+
Glu
TTC
[ENA]
¡û
>W133002377
APIZ01000169
Cyanobacteriota
Dolichospermum circinale AWQC310F [APIZ]
1857
1782
-
Glu
TTC
[ENA]
¡û
Identical group No.480896 (2 seq.)
>CHL1830000439
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
124810
124883
+
Glu
TTC
[ENA]
¡û
>CHL1830000440
KC509524
Stramenopiles
Leptocylindrus danicus ccmp1856 (KC509524)
67128
67055
-
Glu
TTC
[ENA]
¡û
Identical group No.480899 (28 seq.)
>CHL1830000024
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
109672
109599
-
Glu
TTC
[ENA]
¡û
>CHL1830000159
GU323224
Stramenopiles
Thalassiosira oceanica CCMP1005 (GU323224)
39656
39730
+
Glu
TTC
[ENA]
¡û
>CHL1830000165
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
12019
11945
-
Glu
TTC
[ENA]
¡û
>CHL1830000168
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
14114
14040
-
Glu
TTC
[ENA]
¡û
>CHL1830000292
JQ088178
Stramenopiles
Ulnaria acus (JQ088178)
11853
11781
-
Glu
TTC
[ENA]
¡û
>CHL1830000426
KC509520
Stramenopiles
Asterionellopsis glacialis ccmp1717 (KC509520)
19092
19164
+
Glu
TTC
[ENA]
¡û
>CHL1830000431
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
11691
11619
-
Glu
TTC
[ENA]
¡û
>CHL1830000557
KF733443
Stramenopiles
Eunotia naegelii utex FD354 (KF733443)
12573
12499
-
Glu
TTC
[ENA]
¡û
>CHL1830000679
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
36329
36403
+
Glu
TTC
[ENA]
¡û
>CHL1830000683
KJ958482
Stramenopiles
Rhizosolenia imbricata (KJ958482)
18063
17991
-
Glu
TTC
[ENA]
¡û
>CHL1830000685
KJ958483
Stramenopiles
Roundia cardiophora (KJ958483)
54633
54708
+
Glu
TTC
[ENA]
¡û
>CHL1830000687
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
37162
37234
+
Glu
TTC
[ENA]
¡û
>CHL1830000691
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
54700
54774
+
Glu
TTC
[ENA]
¡û
>CHL1830002583
MG755792
Stramenopiles
Plagiogramma staurophorum (MG755792)
1916
1842
-
Glu
TTC
[ENA]
¡û
>CHL1830002586
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
18306
18234
-
Glu
TTC
[ENA]
¡û
>CHL1830002587
MG755794
Stramenopiles
Plagiogrammopsis vanheurckii (MG755794)
38349
38421
+
Glu
TTC
[ENA]
¡û
>CHL1830002591
MG755796
Stramenopiles
Guinardia striata (MG755796)
43561
43635
+
Glu
TTC
[ENA]
¡û
>CHL1830002595
MG755798
Stramenopiles
Attheya longicornis (MG755798)
20347
20275
-
Glu
TTC
[ENA]
¡û
>CHL1830002598
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
11798
11724
-
Glu
TTC
[ENA]
¡û
>CHL1830002601
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
11988
11914
-
Glu
TTC
[ENA]
¡û
>CHL1830002602
MG755801
Stramenopiles
Triceratium dubium (MG755801)
33757
33831
+
Glu
TTC
[ENA]
¡û
>CHL1830002606
MG755802
Stramenopiles
Rhizosolenia fallax (MG755802)
18547
18475
-
Glu
TTC
[ENA]
¡û
>CHL1830002609
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
30112
30037
-
Glu
TTC
[ENA]
¡û
>CHL1830002611
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
54854
54928
+
Glu
TTC
[ENA]
¡û
>CHL1830002623
MG755808
Stramenopiles
Acanthoceras zachariasii (MG755808)
35110
35182
+
Glu
TTC
[ENA]
¡û
>CHL090200124
EF067920
stramenopiles
Phaeodactylum tricornutum
12218
12144
-
Glu
TTC
[ENA]
¡û
>CHL090200126
EF067921
stramenopiles
Thalassiosira pseudonana
55335
55408
+
Glu
TTC
[ENA]
¡û
>W1630017696
LSSF01000062
Unclassified
Thermoplasmatales archaeon SG8-52-4 [LSSF]
2536
2608
+
Glu
TTC
[ENA]
¡û
Identical group No.480916 (5 seq.)
>CHL1830000127
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
94
168
+
Glu
TTC
[ENA]
¡û
>CHL1830000129
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
59850
59776
-
Glu
TTC
[ENA]
¡û
>CHL1830000298
JQ405663
Stramenopiles
Saccharina japonica (JQ405663)
51999
52071
+
Glu
TTC
[ENA]
¡û
>CHL1830000854
KP298002
Stramenopiles
Undaria pinnatifida (KP298002)
52127
52199
+
Glu
TTC
[ENA]
¡û
>CHL1830000927
KR336545
Stramenopiles
Costaria costata (KR336545)
52290
52362
+
Glu
TTC
[ENA]
¡û
Identical group No.480921 (1 seq.)
>CHL1830000942
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
79577
79504
-
Glu
TTC
[ENA]
¡û
Identical group No.504587 (2 seq.)
>CHL1830000433
KC509522
Stramenopiles
Cylindrotheca closterium ccmp1855 (KC509522)
54649
54575
-
Glu
TTC
[ENA]
¡û
>CHL1830000444
KC509525
Stramenopiles
Lithodesmium undulatum ccmp1797 (KC509525)
12019
11947
-
Glu
TTC
[ENA]
¡û
Identical group No.504606 (1 seq.)
>CHL1830002622
MG755807
Stramenopiles
Astrosyne radiata (MG755807)
5279
5207
-
Glu
TTC
[ENA]
¡û
Identical group No.523644 (1 seq.)
>CHL1830000060
EU168190
Stramenopiles
Heterosigma akashiwo NIES 293 (EU168190)
23003
23075
+
Glu
TTC
[ENA]
¡û
Identical group No.536484 (1 seq.)
>CHL1830000437
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
12199
12126
-
Glu
TTC
[ENA]
¡û
Identical group No.536486 (1 seq.)
>CHL1830000077
EU912438
Stramenopiles
Vaucheria litorea (EU912438)
67005
67077
+
Glu
TTC
[ENA]
¡û
Identical group No.536495 (2 seq.)
>CHL1830001187
KU164871
Stramenopiles
Pleurocladia lacustris Sa2 (KU164871)
80039
80113
+
Glu
TTC
[ENA]
¡û
>CHL1830001188
KU164871
Stramenopiles
Pleurocladia lacustris Sa2 (KU164871)
138170
138096
-
Glu
TTC
[ENA]
¡û
Identical group No.561563 (6 seq.)
>CHL1830000354
KC012944
Stramenopiles
Nannochloropsis gaditana 3B (KC012944)
92906
92834
-
Glu
TTC
[ENA]
¡û
>CHL1830000455
KC598085
Stramenopiles
Nannochloropsis granulata (KC598085)
69736
69808
+
Glu
TTC
[ENA]
¡û
>CHL1830000458
KC598087
Stramenopiles
Nannochloropsis oculata CCMP525 (KC598087)
69528
69600
+
Glu
TTC
[ENA]
¡û
>CHL1830000461
KC598088
Stramenopiles
Nannochloropsis salina CCMP537 (KC598088)
67296
67368
+
Glu
TTC
[ENA]
¡û
>CHL1830000464
KC598089
Stramenopiles
Nannochloropsis limnetica CCMP505 (KC598089)
69522
69594
+
Glu
TTC
[ENA]
¡û
>CHL1830000467
KC598090
Stramenopiles
Nannochloropsis oceanica CCMP531 (KC598090)
69604
69676
+
Glu
TTC
[ENA]
¡û
Identical group No.611332 (2 seq.)
>CHL1830000121
FM957154
Stramenopiles
Fucus vesiculosus (FM957154)
51145
51217
+
Glu
TTC
[ENA]
¡û
>CHL1830000891
KP881334
Stramenopiles
Sargassum horneri (KP881334)
50731
50803
+
Glu
TTC
[ENA]
¡û
Identical group No.611333 (1 seq.)
>CHL1830000133
GQ231542
Stramenopiles
Aureoumbra lagunensis CCMP 1507 (GQ231542)
85668
85594
-
Glu
TTC
[ENA]
¡û
Identical group No.619496 (1 seq.)
>CHL1830002619
MG755806
Stramenopiles
Biddulphia tridens (MG755806)
16083
16011
-
Glu
TTC
[ENA]
¡û
Identical group No.627331 (1 seq.)
>CHL1830001496
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
19377
19305
-
Glu
TTC
[ENA]
¡û
Identical group No.627337 (1 seq.)
>CHL1830001862
KY433579
Stramenopiles
Dictyopteris divaricata (KY433579)
73790
73716
-
Glu
TTC
[ENA]
¡û
Identical group No.646374 (1 seq.)
>CHL1830000039
AP014625
Stramenopiles
Triparma laevis (AP014625)
62638
62566
-
Glu
TTC
[ENA]
¡û
Identical group No.652711 (1 seq.)
>CHL1830002615
MG755805
Stramenopiles
Biddulphia biddulphiana (MG755805)
15301
15229
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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