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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = GAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.405542 (48 seq.)
>WENV180113956
OAPR01071457
[OAPR] marine metagenome; seawater
71
-1
-
Val
GAC
[ENA]
¢þ
>WENV180208942
OBAK01000386
[OBAK] marine metagenome; ENVO.00002150
2103
2174
+
Val
GAC
[ENA]
¢þ
>WENV180209456
OBAL01000981
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1347
1273
-
Val
GAC
[ENA]
¢þ
>WENV180356723
OBNL01013204
[OBNL] marine metagenome; ENVO:00002010
377
303
-
Val
GAC
[ENA]
¢þ
>WENV180383915
OBOV01076339
[OBOV] marine metagenome; ENV:00002010
224
296
+
Val
GAC
[ENA]
¢þ
>WENV180384087
OBOW01005949
[OBOW] marine metagenome; seawater
349
421
+
Val
GAC
[ENA]
¢þ
>WENV180393762
OBPR01006556
[OBPR] marine metagenome; ENVO:00002042
348
422
+
Val
GAC
[ENA]
¢þ
>WENV180399115
OBQG01000159
[OBQG] marine metagenome; ENV:00002010
2112
2184
+
Val
GAC
[ENA]
¢þ
>WENV180399278
OBQH01000183
[OBQH] marine metagenome; ENV:00002010
1287
1359
+
Val
GAC
[ENA]
¢þ
>WENV180399513
OBQO01000044
[OBQO] marine metagenome; ENVO:00002010
4874
4802
-
Val
GAC
[ENA]
¢þ
>WENV180784104
ODIQ01142737
[ODIQ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180831443
ODKB01198215
[ODKB] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV180897677
ODNI01054449
[ODNI] human metagenome; G_DNA_Tongue dorsum
309
381
+
Val
GAC
[ENA]
¢þ
>WENV180901442
ODOK01000096
[ODOK] human metagenome; G_DNA_Tongue dorsum
176
104
-
Val
GAC
[ENA]
¢þ
>WENV180930134
ODTN01088010
[ODTN] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181126500
OEFV01128389
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
74
148
+
Val
GAC
[ENA]
¢þ
>WENV181135025
OEGG01001874
[OEGG] human metagenome; G_DNA_Tongue dorsum
3942
3870
-
Val
GAC
[ENA]
¢þ
>WENV181176027
OEJQ01127170
[OEJQ] human metagenome; G_DNA_Tongue dorsum
175
103
-
Val
GAC
[ENA]
¢þ
>WENV181324125
OFLC01000180
[OFLC] marine metagenome; melt pond
3115
3190
+
Val
GAC
[ENA]
¢þ
>WENV181385841
OFRK01020107
[OFRK] marine metagenome; sea ice
355
430
+
Val
GAC
[ENA]
¢þ
>WENV181392984
OFRX01026212
[OFRX] seawater metagenome; seawater
599
674
+
Val
GAC
[ENA]
¢þ
>WENV183223564
OLQM01035376
[OLQM] human gut metagenome; faeces
401
474
+
Val
GAC
[ENA]
¢þ
>WENV183620942
OOFT01000255
[OOFT] marine metagenome; sea ice
3008
3083
+
Val
GAC
[ENA]
¢þ
>WENV183623232
OOFX01038274
[OOFX] marine metagenome; sea ice
388
463
+
Val
GAC
[ENA]
¢þ
>WENV183790499
PPYF01411599
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4424
4352
-
Val
GAC
[ENA]
¢þ
>WENV170567424
FLMP01000425
[FLMP] seawater metagenome; seawater
9322
9247
-
Val
GAC
[ENA]
¢þ
>WENV170614489
FUWD012834969
[FUWD] metagenome; unknown
874
800
-
Val
GAC
[ENA]
¢þ
>WENV170614492
FUWD012834970
[FUWD] metagenome; unknown
106
32
-
Val
GAC
[ENA]
¢þ
>WENV170617547
FUWD012929498
[FUWD] metagenome; unknown
260
335
+
Val
GAC
[ENA]
¢þ
>WENV170619962
FUWD013023621
[FUWD] metagenome; unknown
1664
1589
-
Val
GAC
[ENA]
¢þ
>WENV170628093
FUWD013241673
[FUWD] metagenome; unknown
1664
1589
-
Val
GAC
[ENA]
¢þ
>WENV170951614
MEHZ011561481
[MEHZ] marine metagenome; marine surface water
289
363
+
Val
GAC
[ENA]
¢þ
>WENV170951638
MEHZ011562055
[MEHZ] marine metagenome; marine surface water
2460
2385
-
Val
GAC
[ENA]
¢þ
>W1910340151
FTLP01000016
Actinomycetota
Actinomyces marseillensis Marseille-P2818 [FTLP]
158161
158233
+
Val
GAC
[ENA]
¡û
>SRA1001283
SRR001062.270190
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
82
8
-
Val
GAC
[SRA]
>SRA1001286
SRR001062.282413
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
82
8
-
Val
GAC
[SRA]
>SRA1024667
SRR035084.372476
454 Sequencing (SRP001805)
254
180
-
Val
GAC
[SRA]
>SRA1045311
SRR035093.64614
454 Sequencing (SRP001814)
211
137
-
Val
GAC
[SRA]
>SRA1045929
SRR035093.201241
454 Sequencing (SRP001814)
410
484
+
Val
GAC
[SRA]
>SRA1046271
SRR035093.268095
454 Sequencing (SRP001814)
276
202
-
Val
GAC
[SRA]
>SRA1046385
SRR035093.294075
454 Sequencing (SRP001814)
222
147
-
Val
GAC
[SRA]
>SRA1046779
SRR035093.382624
454 Sequencing (SRP001814)
418
344
-
Val
GAC
[SRA]
>SRA1046914
SRR035093.417924
454 Sequencing (SRP001814)
236
162
-
Val
GAC
[SRA]
>SRA1046983
SRR035093.429557
454 Sequencing (SRP001814)
239
165
-
Val
GAC
[SRA]
>SRA1047506
SRR035093.560469
454 Sequencing (SRP001814)
261
335
+
Val
GAC
[SRA]
>W121063481
AJKR01000003
Actinomycetota
Candidatus Aquiluna sp. IMCC13023 [AJKR]
199813
199739
-
Val
GAC
[ENA]
¡û
>W1610625731
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Val
GAC
[ENA]
¡û
>W1710756858
LIBA01000117
Actinomycetota
Microbacteriaceae bacterium BACL28 MAG-120531-bin53 [LIBA]
75
1
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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