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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = GAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320985 (2 seq.)
>ENV08001215
ABMU01105762
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
100
24
-
Ile
GAT
[ENA]
¡û
>SRA1001264
SRR001062.2321
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
100
24
-
Ile
GAT
[SRA]
Identical group No.686089 (2 seq.)
>ENV08001212
ABMU01095793
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
72
1
-
Pseudo
GAT
[ENA]
¡û
>SRA1001269
SRR001062.75831
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
72
1
-
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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