This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = TCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.247831 (2 seq.)
>ENV08001200
ABMU01014769
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
87
9
-
Arg
TCT
[ENA]
¡û
>SRA1001289
SRR001062.320811
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
87
9
-
Arg
TCT
[SRA]
Identical group No.320986 (2 seq.)
>ENV08001205
ABMU01066382
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
32
108
+
Arg
TCT
[ENA]
¡û
>SRA1001272
SRR001062.91736
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
32
108
+
Arg
TCT
[SRA]
Identical group No.506804 (2 seq.)
>ENV08001201
ABMU01021026
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
30
105
+
Arg
TCT
[ENA]
¡û
>SRA1001266
SRR001062.33778
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
30
105
+
Arg
TCT
[SRA]
Identical group No.506805 (2 seq.)
>ENV08001209
ABMU01088719
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
97
22
-
Arg
TCT
[ENA]
¡û
>SRA1001268
SRR001062.51175
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
97
22
-
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK