This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
Anticodon = TGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.320988 (2 seq.)
>ENV08001204
ABMU01030530
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
6
82
+
Pro
TGG
[ENA]
¡û
>SRA1001277
SRR001062.153057
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
6
82
+
Pro
TGG
[SRA]
Identical group No.320990 (2 seq.)
>ENV08001216
ABMU01125063
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
83
7
-
Pro
TGG
[ENA]
¡û
>SRA1001282
SRR001062.268290
Stromatolites, microbial fraction from Highborne Cay microbiolite in the Bahamas (SRP000150)
83
7
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK