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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300177 (4 seq.)
>WENV011315
AACY020308534
Marine microbial communities from Global Ocean Sampling (GOS)
635
557
-
Arg
CCG
[ENA]
>WENV183682434
ORMF010437611
[ORMF] groundwater metagenome; groundwater
291
217
-
Arg
CCG
[ENA]
¢þ
>ENV08001235
ABMV01033231
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
96
22
-
Arg
CCG
[ENA]
¡û
>SRA1001318
SRR001063.116131
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
96
22
-
Arg
CCG
[SRA]
Identical group No.300179 (2 seq.)
>ENV08001243
ABMV01046959
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
27
101
+
Arg
CCG
[ENA]
¡û
>SRA1001353
SRR001063.282876
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
27
101
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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