This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = CGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300182 (2 seq.)
>ENV08001226
ABMV01018425
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
31
-
Ala
CGC
[ENA]
¡û
>SRA1001334
SRR001063.206670
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
107
31
-
Ala
CGC
[SRA]
Identical group No.483939 (2 seq.)
>ENV08001239
ABMV01035967
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
44
116
+
Ala
CGC
[ENA]
¡û
>SRA1001323
SRR001063.134049
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
44
116
+
Ala
CGC
[SRA]
Identical group No.483941 (2 seq.)
>ENV08001284
ABMV01234193
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
9
-
Ala
CGC
[ENA]
¡û
>SRA1001326
SRR001063.145933
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
82
9
-
Ala
CGC
[SRA]
Identical group No.672176 (3 seq.)
>ENV08001249
ABMV01062384
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
107
33
-
Ala
CGC
[ENA]
¡û
>WENV170674371
LAZR01060672
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
95
21
-
Ala
CGC
[ENA]
¢þ
>SRA1001305
SRR001063.70885
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
107
33
-
Ala
CGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK