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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = CGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300185 (6 seq.)
>WENV180039036
LLBY010021450
[LLBY] soil metagenome; soil from tomato rhizosphere
8458
8532
+
Pro
CGG
[ENA]
¢þ
>WENV180298255
OBJA01235859
[OBJA] soil metagenome; sediment, water from around vicinity
330
254
-
Pro
CGG
[ENA]
¢þ
>ENV08001244
ABMV01047248
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
83
9
-
Pro
CGG
[ENA]
¡û
>SRA1001343
SRR001063.233603
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
83
9
-
Pro
CGG
[SRA]
>ENV09003047
ADGO01002257
Compost metagenome contig00001
236
162
-
Pro
CGG
[ENA]
¡û
>ENV09003473
ADGO01057363
Compost metagenome contig00001
401
325
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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