This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = CTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.787954 (2 seq.)
>ENV08001276
ABMV01161686
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
27
98
+
Gln
CTG
[ENA]
¡û
>SRA1001303
SRR001063.59328
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
27
98
+
Gln
CTG
[SRA]
Identical group No.787957 (2 seq.)
>ENV08001247
ABMV01056236
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
108
35
-
Gln
CTG
[ENA]
¡û
>SRA1001336
SRR001063.210127
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
108
35
-
Gln
CTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK