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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483933 (7 seq.)
>ENV08001254
ABMV01081979
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
89
14
-
Lys
CTT
[ENA]
¡û
>ENV08001265
ABMV01103021
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
89
14
-
Lys
CTT
[ENA]
¡û
>WENV170580098
FUFK010044301
[FUFK] metagenome; unknown
10290
10215
-
Lys
CTT
[ENA]
¢þ
>WENV170591463
FUFK010773624
[FUFK] metagenome; unknown
2184
2259
+
Lys
CTT
[ENA]
¢þ
>WENV170651259
JRYF01004195
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
74363
74288
-
Lys
CTT
[ENA]
¢þ
>SRA1001299
SRR001063.42375
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
89
14
-
Lys
CTT
[SRA]
>SRA1001314
SRR001063.104133
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
89
14
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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