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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118265 (2 seq.)
>ENV08001277
ABMV01166965
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
87
3
-
Leu
GAG
[ENA]
¡û
>SRA1001297
SRR001063.31114
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
87
3
-
Leu
GAG
[SRA]
Identical group No.118266 (3 seq.)
>ENV08001237
ABMV01034865
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
109
23
-
Leu
GAG
[ENA]
¡û
>SRA1001304
SRR001063.66347
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
109
23
-
Leu
GAG
[SRA]
>SRA1001307
SRR001063.72458
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
109
23
-
Leu
GAG
[SRA]
Identical group No.118267 (2 seq.)
>ENV08001232
ABMV01028903
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
88
4
-
Leu
GAG
[ENA]
¡û
>SRA1001315
SRR001063.111725
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
88
4
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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