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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.280683 (10 seq.)
>ENV08001224
ABMV01017194
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
34
110
+
Ile
GAT
[ENA]
¡û
>WENV170972526
MTKX01033521
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2084
2008
-
Ile
GAT
[ENA]
¢þ
>WENV170990586
MWWA01020060
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
178
254
+
Ile
GAT
[ENA]
¢þ
>SRA1001355
SRR001063.299283
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
34
110
+
Ile
GAT
[SRA]
>W1810116090
PHNO01002064
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
294
370
+
Ile
GAT
[ENA]
¡û
>W1810116101
PHNO01002391
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
149
73
-
Ile
GAT
[ENA]
¡û
>W1810116104
PHNO01002392
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
294
370
+
Ile
GAT
[ENA]
¡û
>W1810116109
PHNO01002579
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
149
73
-
Ile
GAT
[ENA]
¡û
>W1810116112
PHNO01003012
Alphaproteobacteria
Amaricoccus sp. HAR-UPW-R2A-40 [PHNO]
268
344
+
Ile
GAT
[ENA]
¡û
>W1810679225
QKPN01000044
Alphaproteobacteria
Rhodobacteraceae bacterium DSL-40 [QKPN]
3832
3756
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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