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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483947 (9 seq.)
>C171131406
LT828648
Nitrospirota
Nitrospira japonica [LT828648]
1763099
1763174
+
Cys
GCA
-
¡û
>WENV180039659
LLBY010115301
[LLBY] soil metagenome; soil from tomato rhizosphere
615
540
-
Cys
GCA
[ENA]
¢þ
>WENV180327746
OBKT01457296
[OBKT] soil metagenome; soil
121
46
-
Cys
GCA
[ENA]
¢þ
>WENV180691005
OCZS010046325
[OCZS] soil metagenome; soil
614
539
-
Cys
GCA
[ENA]
¢þ
>WENV170565811
FKKE01001047
[FKKE] freshwater metagenome; freshwater
14568
14493
-
Cys
GCA
[ENA]
¢þ
>WENV170565958
FKKE01002947
[FKKE] freshwater metagenome; freshwater
238
313
+
Cys
GCA
[ENA]
¢þ
>WENV170654013
JRYK01002774
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
1562
1487
-
Cys
GCA
[ENA]
¢þ
>WENV170661685
JXWV01088768
[JXWV] soil metagenome; rice field; organic FYM Plot
292
367
+
Cys
GCA
[ENA]
¢þ
>SRA1001356
SRR001063.307682
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
74
1
-
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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