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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.672180 (2 seq.)
>ENV08001260
ABMV01096589
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
82
10
-
Gly
GCC
[ENA]
¡û
>SRA1001331
SRR001063.194760
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
82
10
-
Gly
GCC
[SRA]
Identical group No.787956 (2 seq.)
>ENV08001291
ABMV01271417
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
76
5
-
Gly
GCC
[ENA]
¡û
>SRA1001333
SRR001063.202742
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
76
5
-
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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