This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244395 (2 seq.)
>ENV08001286
ABMV01240893
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
21
96
+
Pro
GGG
[ENA]
¡û
>SRA1001335
SRR001063.207220
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
21
96
+
Pro
GGG
[SRA]
Identical group No.300183 (2 seq.)
>ENV08001280
ABMV01197232
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
25
99
+
Pro
GGG
[ENA]
¡û
>SRA1001337
SRR001063.221910
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
25
99
+
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK