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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300175 (17 seq.)
>W1711335886
MBRF01000014
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
67688
67763
+
Asp
GTC
[ENA]
¡û
>C025201
BA000022
Cyanobacteriota
Synechocystis sp. PCC 6803 [BA000022]
1329236
1329163
-
Asp
GTC
[Ensembl]
¡û
>W141051315
AMZV01000025
Cyanobacteriota
Synechocystis sp. PCC 6714 [AMZV]
12904
12979
+
Asp
GTC
[ENA]
¡û
>ENV08001240
ABMV01037480
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
95
22
-
Asp
GTC
[ENA]
¡û
>C181160859
CP028094
Cyanobacteriota
Synechocystis sp. IPPAS B-1465 [CP028094]
1328054
1327979
-
Asp
GTC
-
¡û
>W1910617536
LIRO01000143
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
12720
12645
-
Asp
GTC
[ENA]
¡û
>W1911638265
PVWJ01000006
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
33847
33772
-
Asp
GTC
[ENA]
¡û
>SRA1001294
SRR001063.18431
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
95
22
-
Asp
GTC
[SRA]
>C151027462
CP007542
Cyanobacteriota
Synechocystis sp. PCC 6714 [CP007542]
3394317
3394242
-
Asp
GTC
[Ensembl]
¡û
>C11122312
AP012205
Cyanobacteriota
Synechocystis sp. PCC 6803 GT-S [AP012205]
1328054
1327979
-
Asp
GTC
[Ensembl]
¡û
>C121000622
AP012276
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. GT-I [AP012276]
1328156
1328081
-
Asp
GTC
[Ensembl]
¡û
>C121000661
AP012277
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-N [AP012277]
1328252
1328177
-
Asp
GTC
[Ensembl]
¡û
>C121000700
AP012278
Cyanobacteriota
Synechocystis sp. PCC 6803 substr. PCC-P [AP012278]
1328264
1328189
-
Asp
GTC
[Ensembl]
¡û
>C161046071
CP012832
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP012832]
1328310
1328235
-
Asp
GTC
-
¡û
>C131000686
AP012495
Bacillota
Bacillus subtilis [AP012495]
2712502
2712427
-
Asp
GTC
[Ensembl]
¡û
>C131002617
CP003265
Cyanobacteriota
Synechocystis sp. PCC 6803 [CP003265]
1327707
1327632
-
Asp
GTC
-
¡û
>W1611066593
MBRF01000014
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
67688
67763
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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