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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
Anticodon = GTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483951 (2 seq.)
>ENV08001285
ABMV01238404
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
76
1
-
His
GTG
[ENA]
¡û
>SRA1001363
SRR001063.339656
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
76
1
-
His
GTG
[SRA]
Identical group No.672179 (2 seq.)
>ENV08001223
ABMV01010530
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
79
5
-
His
GTG
[ENA]
¡û
>SRA1001325
SRR001063.143470
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
79
5
-
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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